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Consensus-level substitution rates are distinct from the virion-level rate

Pascall, David J
arXiv (All) · Papers
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methodologypopulations-and-evolution
Estimating viral substitution rates is central to evolutionary epidemiology, and recent interest in within-host evolution has sharpened the question of what such rates measure. I distinguish two classes of evolutionary rate estimand that are rarely separated in phylogenetic analysis: the virion-leve
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