bioRxiv / medRxiv
open access
A telomere-to-telomere genome of Mojiang purple rice resolves a rare three-copy structural allele upstream of Kala4/OsB2
Background: Black and purple pericarp in rice requires activation of the basic helix-loop-helix (bHLH) regulator Kala4/OsB2, and the known black-rice allele is a complex promoter rearrangement. Such repeat-embedded alleles can be difficult to resolve in fragmented assemblies, and for many pigmented
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