MIND: Decoupling Model-Induced Label Noise via Latent Manifold Disentanglement
Dayong Ren 1
1. Introduction
arXiv:2605.16081v1 [cs.LG] 15 May 2026
Abstract
The success of deep learning has long been predicated on the availability of large-scale, high-quality annotations. However, as the demand for data scale outstrips the capacity of manual labeling, the field is undergoing a fundamental shift towards learning from automatic annotation. In this paradigm, pre-trained experts or Foundation Models (e.g., CLIP, SAM) are leveraged to generate pseudo-labels for unlabeled data (Kirillov et al., 2023; Sohn et al., 2020). While this scalable paradigm effectively circumvents the annotation bottleneck, it introduces a critical, non-trivial distributional shift: model-induced label noise.
The paradigm of learning from automatic annotations—driven by pre-trained experts and Foundation Models—dominates data-hungry applications. However, it introduces a critical challenge: model-induced label noise. Unlike stochastic noise in classical robust learning, this noise stems from annotator inductive biases, manifesting as systematic errors tightly coupled with local feature manifolds. Existing methods relying on global transition matrices underfit these structural patterns, while learning instance-specific matrices remains mathematically intractable. We propose Model-Induced Noise Decoupling (MIND), a theoretically grounded framework addressing this dilemma. We demonstrate that the highdimensional noise manifold can be decoupled into tractable, subspace-dependent components via Latent Manifold Disentanglement. Specifically, our Latent Decoupling Estimator (LDE) dynamically projects samples into latent structural clusters with consistent error modes, facilitating noise identifiability without ground-truth anchor points. To rigorously evaluate robustness, we adopt a hierarchical protocol: moving from controlled noise on CIFAR-100 to a structural stress test on large-scale real-world 3D datasets (S3DIS, ScanNet), where error patterns explicitly couple with geometric manifolds. Empirically, MIND significantly outperforms state-of-the-art methods on these complex benchmarks and effectively corrects zero-shot hallucinations from Vision-Language Models (e.g., OpenSeg), highlighting its potential as a robust distillation framework for Foundation Models.
Classical Label Noise Learning (LNL) approaches typically assume noise is stochastic and independent of the data features (i.e., class-conditional noise). However, noise generated by an annotator model is inherently systematic and instance-dependent. These errors are not random flips; they are manifestations of the annotator’s inductive biases, consistently misclassifying samples that share specific local features (e.g., confusion between texture-less surfaces, or boundary ambiguity in rare views). Consequently, standard methods relying on a global transition matrix T (Patrini et al., 2017) or robust representation learning (Huang et al., 2023; Ren et al., 2023) fundamentally underfit the complexity of these structural errors. Conversely, attempting to estimate a unique transition matrix T (x) for every instance x constitutes an ill-posed problem with an intractable parameter space (infinite degrees of freedom). To resolve this dilemma, we must find a middle ground. Building on recent works utilizing manifoldbased regularization (Cheng et al., 2022; Shao et al., 2022; Qian et al., 2025), our key insight is that while the noise is instance-dependent, it is not chaotic. The error patterns are governed by the underlying geometric and feature manifolds of the data. Therefore, to make the estimation of T (x) tractable, we postulate that the high-dimensional noise manifold can be approximated by a linear combination of a finite set of basis transition matrices. By projecting instances into latent subspaces based on their local geometric primitives (e.g., planar, linear, or boundary features), we can decouple the complex global noise into simple, subspace-specific components (Diao et al., 2025; Guo et al., 2024).
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State Key Laboratory of Novel Software Technology, Nanjing University, Nanjing 210023, China. Correspondence to: Dayong Ren <[email protected]>. Proceedings of the 43 rd International Conference on Machine Learning, Seoul, South Korea. PMLR 306, 2026. Copyright 2026 by the author(s).
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MIND: Decoupling Model-Induced Label Noise via Latent Manifold Disentanglement