metabarcoding

Documents about metabarcoding

• First eDNA metabarcoding survey of the distribution of endangered Nooksack dace in urban watersheds of British Columbia – 16S dataset#408604GBIF Registry
• First eDNA metabarcoding survey of the distribution of endangered Nooksack dace in urban watersheds of British Columbia – 12S dataset#408605GBIF Registry
• DNA metabarcoding of diatoms: A next-generation tool for aquatic biodiversity and bioassessment#313983ARPHA OAI-PMH Endpoint
• DNA metabarcoding reveals key floral resources for native pollinators in post‐fire landscapes#1218663Europe PMC
• LMO 16S rRNA metabarcoding dataset#635443GBIF Registry
• Microsporidian diversity and host associations in aquatic invertebrate communities of South Bohemian fish ponds revealed by metabarcoding#663683ARPHA OAI-PMH Endpoint
• Mosquito environmental DNA metabarcoding dataset in water-holding containers in dengue fever-endemic areas of DKI Jakarta, Indonesia#67581Europe PMC
• Modelling technical and biological biases in macroinvertebrate community assessment from bulk preservative using multiple metabarcoding markers#1120573HAL (France)
• Mammal diversity in remote and harsh habitats: validating the power of environmental DNA metabarcoding at the southernmost tip of South America#268445GBIF Registry
• Separating Faces in ARMS Metabarcoding Improves Marine Biodiversity Monitoring: A Comparison Across Protocols, Experimental Designs and Photographic Surveys#784538Europe PMC
• LMO 16S rRNA metabarcoding dataset#632423api.researchdata.se
• Profiling the eukaryotic diversity over a year in a lake ecosystem through short- and long-read metabarcoding#147413HAL (France)
• Assessing environmental DNA metabarcoding and camera trap surveys as complementary tools for biomonitoring of remote desert water bodies#1120467HAL (France)
• Cytochrome c oxidase I deep amplicon sequencing for metabarcoding of equine strongyle communities: unexpectedly high Strongylus spp. prevalence in treated horses#14268HAL (France)
• Data from: DNA metabarcoding reveals key floral resources for native pollinators in post-fire landscapes#475593Figshare
• Focal vs. fecal: Seasonal variation in the diet of wild vervet monkeys from observational and DNA metabarcoding data#1203703HAL (France)
• Separating faces in ARMS metabarcoding improves marine biodiversity monitoring#294521GBIF Registry
• CalCOFI October 2022 Vertebrate eDNA#1000513GBIF Registry
• Baseline data for a Danish TICI index - CO1#642843GBIF Registry
• DNA and RNA metabarcoding reveal distinct seed-borne mycobiota#5018Europe PMC
• eDNA metabarcoding for biodiversity assessment, generalist predators as sampling assistants#1146502HAL (France)
• VTAM: A robust pipeline for validating metabarcoding data using controls#1328896HAL (France)
• A Multi-Taxa Approach to Estuarine Biomonitoring: Assessing Vertebrate Biodiversity and Ecological Continuity Using Environmental DNA Metabarcoding in the Rance River (Brittany, France)#153765HAL (France)
• Comparing accuracy and biases of DNA metabarcoding, hybridization capture, and metagenomic sequencing for quantifying herbivore diets#387562Figshare
• Freshwater Mussel Diet#1042266University of Virginia Dataverse Dataverse OAI Archive
• Monitoring the ecological status of rivers with diatom eDNA metabarcoding: a comparison of taxonomic markers and analytical approaches for the inference of a molecular diatom index#308320HAL (France)
• DNA metabarcoding of diatoms: A next-generation tool for aquatic biodiversity and bioassessment#330278HAL (France)
• Cultivation type, season, and soil nematode interactions affect wheat rhizosphere metabarcoding profiles.#418612NCBI PubMed Central
• Nemabiome metabarcoding reveals strongyle parasite diversity in wild deer in Victoria, Australia.#1175618NCBI PubMed Central
• COI Metabarcoding Genetic Observations of Marine Species in the Port of Wallhamn, Sweden (2022)#1305822api.researchdata.se
• Comprehensive coverage of human last meal components revealed by a forensic DNA metabarcoding approach#1146495HAL (France)
• Unveiling Protist Composition and Diversity Patterns With eDNA Metabarcoding: Comparing Short- and Long-Read Approaches#8222HAL (France)
• Fine-Scale Ecological Biomonitoring in a Large, Complex Agriculturally Impacted Watershed via eDNA Metabarcoding.#193759NCBI PubMed Central
• Stemflow for detecting mammalian environmental DNA: a case study in a zoo#210249Zenodo (CERN)
• Sea turtle nest sand ITS mycobiota Malaysia#304369GBIF Registry
• Biogeography of tropical dry forest soils#366038ARPHA OAI-PMH Endpoint
• In silico assessment of 18S rDNA metabarcoding markers for the characterization of nematode communities#1203676HAL (France)
• Metabarcoding and metagenomic data across aquatic environmental gradients along the coasts of France and Chile#1379647HAL (France)
• Supplementary data for the study of Formica polyctena infrabuccal pockets microbiome, containing tables storing both details on microbial community analyzed through microscopy, culturing and metabarcoding as well as metadata of the ant sampling#448336Dane Badawcze UW Dataverse OAI Archive
• Hydrologic History Regulates Microbial Biofilm Diversity and Ecosystem Function#173976Digital Commons @ Michigan Tech
• Biogeography of tropical dry forest soils#411807HAL (France)
• Riding the Storm: Microeukaryote Community Responses to Hurricane Disturbance#651834Europe PMC
• The first environmental DNA-based inventory of soil fungal diversity in Ukraine - ITS-based occurrences#1079222GBIF Registry
• Citizens of the Sea: Pacific Rally 2024 eDNA Metabarcoding Dataset#448698GBIF Registry
• 16S rRNA amplicon metabarcoding dataset from a retreating glacier forefield in the high tropical andes.#151532PubMed
• Machine learning-based assessment of the healthy human gut mycobiota landscape using ITS1 DNA metabarcoding data.#174558NCBI PubMed Central
• Characterizing fish species diversity in the uThukela marine protected area using environmental DNA metabarcoding.#219623ResearchSpace
• Sea turtle nest sand 16S microbiota Malaysia#304370GBIF Registry
• Metabarcoding replicate detection frequency tracks ddPCR copy number for cod and herring eDNA in ancient marine sediments#432722bioRxiv / medRxiv
• Investigating the Impacts of Urbanisation on Blue Tit (Cyanistes caeruleus) Diet and Reproductive Success via Faecal DNA Metabarcoding#451783Durham e-Theses

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