metagenomics

Documents about metagenomics

• VSEARCH: a versatile open source tool for metagenomics#6503OpenAlex
• Viral metagenomics of synanthropic urban bats: A surveillance strategy for uncovering potentially zoonotic viruses#676372Europe PMC
• Microbial Profiling in Pockets Related to Chronic Periodontitis Patients Using 16s RNA Metagenomics Sequencing#842837ClinicalTrials.gov
• Gut microbiome in type 2 diabetes: insights from metagenomics, multi-omics, and diet-microbe interactions#4547Europe PMC
• Coronavirus Studied by Metagenomics in ARDS COVID-19 Patients#884128ClinicalTrials.gov
• Protein language models uncover carbohydrate-active enzyme function in metagenomics.#337073Apollo
• Table 1_Causal relationship between gut microbiota and adenomyosis: metagenomics sequencing and Mendelian randomization.xlsx#266433Figshare
• Integrative metagenomics and structural bioinformatics identify explainable gut microbial variants associated with Crohn’s disease#358735PLOS
• Assessment of protocols for characterization of the human skin microbiome using shotgun metagenomics and comparative analysis with 16S metabarcoding#442569HAL (France)
• Syndromic cholera diagnosis masks diverse causes of diarrhoeal disease in Burundi revealed by portable metagenomics#631430PLOS
• Interpretable and accurate prediction models for metagenomics data#104334PhilArchive
• From sequences to knowledge: challenges and opportunities of genome-resolved metagenomics#332228ADA University of Tartu Library
• MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct <i>de Bruijn</i> graph#7088OpenAlex
• DiscoVir: an automated, web-based pipeline for viral metagenomics.#161935NCBI PubMed Central
• Monoclonal anti-dsRNA antibody-based metagenomics (MADAM) reveal Pyricularia oryzae mycovirome#314151bioRxiv / medRxiv
• Metagenomics for antimicrobial resistance: from resistome surveillance to mechanistic inference.#472477NCBI PubMed Central
• Improved metagenomic analysis with Kraken 2#7159OpenAlex
• Artificial intelligence in microbiology: implications for metagenomics, diagnostics, and AMR surveillance.#236376NCBI PubMed Central
• Cross-study metagenomics analysis reveals distinct microbial signatures of urinary tract infections#377086bioRxiv / medRxiv
• Household water virome differs by distribution company#431411PLOS
• arcinstitute/opengenome2#786941Hugging Face Datasets
• Meningitis Encephalitis: a Metagenomics-Based Etiology & Epidemiology Research#980778ClinicalTrials.gov
• Metagenomic biomarker discovery and explanation#6742OpenAlex
• Detection, persistence, and rising prevalence of oncogenic viruses revealed by wastewater metagenomics.#288825NCBI PubMed Central
• Library preparation strategy critically impacts RNA virus sensitivity in clinical metagenomics#293987bioRxiv / medRxiv
• Integrating geochemistry and metagenomics reveals spatially specific microbial signatures in a recovering stream#448133BYU ScholarsArchive
• Global metagenomics reveals plastid diversity and unexplored algal lineages#612191eScholarship
• DAMPA - accelerated and simplified design of probe panels for targeted metagenomics using pangenome graphs#296525bioRxiv / medRxiv
• Integrated optimization of experimental and computational workflows improves genome recovery in long-read gut metagenomics#307215bioRxiv / medRxiv
• Accurate MAG reconstruction from complex soil microbiome through combined short- and HiFi long-reads metagenomics#325016bioRxiv / medRxiv
• Assessing the Performance of Shotgun Metagenomics in the Diagnosis of Complex Prosthetic Joint Infections#349993ClinicalTrials.gov
• Atopy-bound Infant Microbiomes#651653eScholarship
• From metagenomics to the metagenome: Conceptual change and the rhetoric of translational genomic research#743459PhilArchive
• Amplification and Selection of Antimicrobial Resistance in the Intestine#854840ClinicalTrials.gov
• Structure, function and diversity of the healthy human microbiome#6884OpenAlex
• Genomics and Metagenomics of Asthma Severity#829145ClinicalTrials.gov
• Shotgun metagenomics reveals distinct functional diversity and metabolic capabilities between 12 000-year- old permafrost and active layers on Muot da Barba Peider (Swiss Alps)#431923University of Pretoria Repository
• Distinct infant resistome trajectories shaped by country income and geography revealed through global metagenomics reanalysis.#25571NCBI PubMed Central
• MosquitoID: Rapid metagenomic sequencing for offline mosquito surveillance.#180532PubMed
• Monitoring of Antimicrobial Resistance Based on Metagenomics Analyses in Pneumonia Patients#230459ClinicalTrials.gov
• Histological and metagenomic analysis of microbial communities in archaeological human bones#232910PLOS
• Metagenomics for bacterial spot pathogen and virulence factor tracking for Ohio fresh market tomato and pepper production#259227bioRxiv / medRxiv
• The Ecological and Temporal Genetic Architecture of The Microbiome in Health and Disease#643599Harvard DASH
• Unraveling the functional dark matter through global metagenomics#922161eScholarship
• The great screen anomaly—a new frontier in product discovery through functional metagenomics#163603WIPO
• Cheeseomics of Grana Padano PDO cheese: Microbial diversity and flavour profiles compared to non-PDO cheeses#268904IRIS
• pylifemap : Mapping data onto the tree of life#322582HAL (France)
• Seasonal Restructuring of Microbial Communities and Resistomes in the Shitalakshya River, Bangladesh Revealed by Shotgun Metagenomics.#335059NCBI PubMed Central
• Metabolomics and metagenomics in mice reveal the role of the gut microbiota in tryptophan metabolism#357396HAL (France)
• Genome-resolved metagenomics of Campylobacter at a wildlife–livestock–human interface in Uganda reveals novel species#398644Europe PMC

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