reference-genome

Documents about reference-genome

• RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome#6723OpenAlex
• Full-length transcriptome assembly from RNA-Seq data without a reference genome#6726OpenAlex
• A global reference for human genetic variation#6732OpenAlex
• Data from: De novo genome assemblies of four rainbow trout genetic lines reveal structural variants in pursuit of a pangenome reference#298358Figshare
• Alignment of Next-Generation Sequencing Reads#976473OpenAlex
• MarpolBase: genome database for Marchantia polymorpha featuring high quality reference genome sequences.#13747NCBI PubMed Central
• Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype#6435OpenAlex
• A reference genome assembly for Quercus canariensis Willd#214774bioRxiv / medRxiv
• The Human Pangenome Project: a global resource to map genomic diversity#335797OpenAlex
• A pseudochromosomal reference genome of the golden jackal, Canis aureus.#335954PubMed
• A reference dataset of 66 high-quality plastid genomes spanning diverse algal lineages#370221Figshare
• DipSkmer: Reference-free population genomics with diploid genome skims#1330556PLOS
• HISAT: a fast spliced aligner with low memory requirements#6332OpenAlex
• A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species#7239OpenAlex
• Hobrac: a reference-guided workflow for genome comparison and synteny visualization#474682bioRxiv / medRxiv
• Long-read, high-coverage reference genome of the nymphalid butterfly Catonephele acontius (Nymphalidae: Biblidinae)#684705Europe PMC
• Long-read, high-coverage reference genome of the nymphalid butterfly Catonephele acontius (Nymphalidae: Biblidinae).#637072PubMed
• Generating eukaryotic reference genome assemblies: Earth BioGenome Project quality standards and recommendations#1187753arXiv (All)
• Fast and accurate short read alignment with Burrows–Wheeler transform#6266OpenAlex
• A chromosome-level reference genome of an endangered plant Craigia yunnanensis.#1501NCBI PubMed Central
• Complete genomes of two Ikeda-genotype <i>Orientia tsutsugamushi</i> isolates from South Korea reveal within-lineage divergence and contrast with the Boryong reference strain#355226PLOS
• Reference genome of the kidnapper ant, Polyergus mexicanus#1015678eScholarship
• Clarifying the phylogeny and systematics of the recalcitrant tribe Leptocircini (Lepidoptera: Papilionidae) with whole‐genome data#1345877HAL (France)
• Assembled and annotated reference genome and demographic history of the eastern chipmunk (Tamias striatus).#152221NCBI PubMed Central
• Reference Genome Assembly of a Tetraploid Accession of the Tuber Crop Tropaeolum tuberosum.#218989NCBI PubMed Central
• A chromosome-level reference genome for Pacific herring (Clupea pallasii) from the Bering Sea.#242545NCBI PubMed Central
• Genomic datasets of Laminaria digitata: Paired-end reads from dd-RADseq, reference genome assembly and filtered VCF#971341ISTA Publications
• Reference genome and reproduction-focused transcriptome for the threatened alpine tree frog (Litoria verreauxii alpina)#1005499The University of Melbourne Library Digital Repository
• A subgenome-resolved and chromosome-scale reference genome assembly of allotetraploid wheat wild relative Aegilops peregrina#1110905bioRxiv / medRxiv
• Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.#491845eScholarship
• A Telomere-to-telomere Diploid Reference Genome and Centromere Structure of the Chinese Quartet.#9316NCBI PubMed Central
• ERGA-BGE reference genome of Diadema setosum: the Black Longspine Urchin invading the Mediterranean sea.#280996NCBI PubMed Central
• A comprehensive reference genome assembly dataset of birds inhabiting Denmark, Greenland, and the Faroe Islands#391826HAL (France)
• FranceGenRef: first steps towards a whole-genome reference panel grounded in French regional ancestral diversity#624432Europe PMC
• Reference-Genome-Absent Sequences as Synthetic Addresses for Programmable Cis-Regulation#651659eScholarship
• New biologically relevant resistance to bacterial wilt in heat-stressed tomato revealed by two-reference Genome Wide Association#471805HAL (France)
• New biologically relevant resistance to bacterial wilt in heat-stressed tomato revealed by two-reference Genome Wide Association.#472570NCBI PubMed Central
• Chromosome-level reference genome of stinkwort, Dittrichia graveolens (L.) Greuter: A resource for studies on invasion, range expansion, and evolutionary adaptation under global change#1174798eScholarship
• Chromosome-level reference genome for the common wall gecko (Tarentola mauritanica) enables comparative and functional studies in geckos.#159867NCBI PubMed Central
• Taming the reference genome jungle: the refget sequence collection standard#484995Europe PMC
• BSgenome.Taestivum.Ensembl.PGSBv20Jagger 1.0.0 (Ensembl — Triticum aestivum)#195200Zenodo
• Reference genome of the long-jawed orb-weaver, Tetragnatha versicolor (Araneae: Tetragnathidae)#780553eScholarship
• Foundational genomic resources for date palm (Phoenix dactylifera): A gap-free, telomere-to-telomere phased assembly of Ajwa and 19 high-quality genome assemblies#643090HAL (France)
• A reference genome assembly for the continentally distributed ring-necked snake, Diadophis punctatus#634715eScholarship
• Reference genome for the American rubyspot damselfly, Hetaerina americana#1174801eScholarship
• Characterization of a deletion in the Hsp70 cluster in the bovine reference genome#451746DSpace
• Reference genome of the Virginia rail, Rallus limicola#683984eScholarship
• Reference Genome Assembly of the Big Berry Manzanita (Arctostaphylos glauca)#1341194eScholarship
• The annotated blueprint: integrated functional genomic resources for a model tetraploid wheat Triticum turgidum cv Kronos#5632Europe PMC
• Chromosome-level reference genome of a foundational California native legume, Acmispon strigosus#1298494eScholarship