rna-seq

Documents about rna-seq

• Near-optimal probabilistic RNA-seq quantification#135243OpenAlex
• RNA-Seq: a revolutionary tool for transcriptomics#6790OpenAlex
• STAR: ultrafast universal RNA-seq aligner#6271OpenAlex
• CRESCENT, a comprehensive RNA-Seq expression, splicing, and coding/non-coding element network tool#121930HAL (France)
• RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome#6723OpenAlex
• Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks#6799OpenAlex
• Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2#6705OpenAlex
• StringTie enables improved reconstruction of a transcriptome from RNA-seq reads#6756OpenAlex
• A scaling normalization method for differential expression analysis of RNA-seq data#7201OpenAlex
• IVT-seq reveals extreme bias in RNA-sequencing#954662Koc University Digital Collections
• Stage‐Specific RNA Turnover Drives Small RNA Dynamics in Arabidopsis – Colletotrichum Interactions#195721HAL (France)
• PIASO tutorial and processed single-cell omics datasets#124827DataCite
• PIASO tutorial and processed single-cell omics datasets#124828DataCite
• RNA-seq data#291292Figshare
• Processed RNA‑seq and CRISPR‑Cas9 screening count matrices for HeLa cell study#482273Figshare
• Defining endothelial cell functional heterogeneity and plasticity using single-cell RNA-sequencing#643704Harvard DASH
• Analysis of gene expression changes in peach leaves in response to Plum pox virus infection using RNA-Seq.#153516HAL (France)
• A Dual Approach to Evaluate the Performance of RNA-Seq Data Analysis Pipelines with Weak Signals#200683HAL (France)
• A comparative evaluation of goodness-of-fit tests for the negative binomial distribution with application to RNA-Seq data#956773SU+ Digital Repository
• Nano Bio DNA Chips (Microarrays Nanochips) New Alternative to Nanochips (RNA-seq Combination of RNA and NGS)#106324PhilArchive
• Finding stable clusterings of single-cell RNA-seq data#310908bioRxiv / medRxiv
• Expression of ACTR3 in cervical cancer and impact on immune cell infiltration and prognosis: A comprehensive analysis based on bulk RNA-Seq and single-cell RNA-Seq.#174640NCBI PubMed Central
• Saturation-seq integrates single-cell saturation genome editing and RNA-seq to quantify NFE2L2 (NRF2) variant effects#422366bioRxiv / medRxiv
• L-GIREMI uncovers RNA editing sites in long-read RNA-seq#492054eScholarship
• Eruca vesicaria subsp. sativa RNA-SEQ gene expression and annotation#355826University of Reading Research Data Archive
• Comparative Studies of Differential Gene Calling Methods for RNA-seq Data#982860DigitalCommons@University of Nebraska
• RNA-seq processed data: Indirubin treatment of TNF-alpha-stimulated Caco-2 cells#669779Figshare
• Genomics and transcriptomics of the Mycobacterium tuberculosis complex#320051DataCite
• Suco - PBMC#176241Zenodo (CERN)
• ATAC-seq and RNA-seq reveal key genes and pathways regulating lactation in the mammary gland of Yili horses.#258254NCBI PubMed Central
• Analysis scripts for the tomato adventitious root single-cell and single-nucleus study#614838Figshare
• Near-optimal probabilistic RNA-seq quantification#138316Unpaywall
• Benchmarking long-read RNA-seq across modalities, methods, and sequencing depth in iNeurons#151544bioRxiv / medRxiv
• geneSync: Gene Symbol Harmonization for Large-scale RNA-seq Data Integration#261159bioRxiv / medRxiv
• Integrated RNA-seq and scRNA-seq to explore the biological mechanisms of mitophagy-related genes in ulcerative colitis#130464Unpaywall
• Supporting data for: Multi-tissue mRNA-seq, miRNA-seq and single-cell RNA-seq data from heat-stressed lactating Holstein cows#384347Figshare
• Independent Hypothesis Weighting In Differential Expression Analysis Of RNA SEQ Data#639895AVESIS
• RAGER: A user-friendly computational platform for integrated analysis of RNA-Seq and ATAC-seq data#219381PLOS
• RNA-seq analysis reveals the dynamic regulation of proteasomal and autophagic degradation systems of rainbow trout (Oncorhynchus mykiss) skeletal muscle challenged with infectious pancreatic necrosis virus (IPNV)#251786Repositorio UNAB
• SCSEQ: A web tool for analyzing single-cell RNA-seq data.#157914NCBI PubMed Central
• The recount3 Python package for programmatic access to uniformly processed RNA-seq data#381644bioRxiv / medRxiv
• SIEVEseq: One-stop differential expression, variability, and skewness analyses using RNA-Seq data#383438bioRxiv / medRxiv
• Reporting and representation of population descriptors in public RNA-seq databases.#975670NCBI PubMed Central
• Transcriptomic Landscape and Regulatory Pathways of Drought Response in Rice (<i>Oryza sativa</i> L.): A Meta-Analysis of Microarray and RNA-Seq Data#67645Europe PMC
• Integrated analyses of large scale RNA-seq data in acute myeloid leukemia#370805HAL (France)
• Integrated RNA-seq and scRNA-seq to explore the biological mechanisms of mitophagy-related genes in ulcerative colitis#120227PLOS
• Identification of cell barcodes from long-read single-cell RNA-seq with BLAZE#211646Ora Oxford University Research
• snPATHO-seq, a versatile FFPE single-nucleus RNA sequencing method to unlock pathology archives#405813HAL (France)
• Supplementary figures and metadata tables for <i>A multi-condition RNA-seq benchmark of mouse jejunum for quantifying </i><i>ex vivo</i><i> transcriptomic variation</i>#238703Figshare
• The Effect of Oncogenic Alterations on Phenotype Profiles in Colorectal Cancer Cells – a Pooled Single-Cell Screen#322212edoc-Server

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