single-cell-analysis

Documents about single-cell-analysis

• Table 1_Machine learning–driven identification and experimental validation of key biomarkers in the bile acid metabolic pathway associated with ulcerative colitis.docx#480325Figshare
• Image 2_Machine learning–driven identification and experimental validation of key biomarkers in the bile acid metabolic pathway associated with ulcerative colitis.png#480326Figshare
• Table 3_Machine learning–driven identification and experimental validation of key biomarkers in the bile acid metabolic pathway associated with ulcerative colitis.docx#480327Figshare
• Table 2_Machine learning–driven identification and experimental validation of key biomarkers in the bile acid metabolic pathway associated with ulcerative colitis.docx#480328Figshare
• Image 3_Machine learning–driven identification and experimental validation of key biomarkers in the bile acid metabolic pathway associated with ulcerative colitis.tif#480329Figshare
• Table 4_Machine learning–driven identification and experimental validation of key biomarkers in the bile acid metabolic pathway associated with ulcerative colitis.docx#480330Figshare
• A single-cell transcriptomic atlas reveals the emergence of medusa-specific cell states in the <i>Aurelia coerulea</i> scyphozoan#457760PLOS
• Identification of mitochondria-related genes in calcific aortic valve disease by integrated analysis of single-cell and bulk transcriptomic atlases.#3913NCBI PubMed Central
• Single-cell multiomics data analysis of potential receptors and therapeutic drugs for epilepsy patients comorbid with depression#130411Unpaywall
• Identification and Validation of Mitophagy-Related Biomarkers in Colorectal Cancer: An Integrated Analysis of Single-Cell Transcriptome and Mendelian Randomization.#174514NCBI PubMed Central
• Machine learning approach to single cell transcriptomic analysis of Sjogren's disease reveals altered activation states of B and T lymphocytes.#247646NCBI PubMed Central
• PTM-Related Signatures Predict Lymph Node Metastasis and Shape Microenvironment in Hepatocellular Carcinoma: A Single-Cell and Bulk Integrated Analysis.#425118NCBI PubMed Central
• ArchetypeShift: An R Package Integrating KEGG-Informed Pathway Analysis and IPA-Derived Functional Predictions for Validation of Single-Cell Archetypes.#452897NCBI PubMed Central
• Integrative single-nucleus transcriptomic analysis identifies UBE2C+ proliferative tumor cells and immune-stromal regulatory crosstalk in small cell lung cancer.#469169NCBI PubMed Central
• The Mechanism of Gut Microbiota in Breast Cancer Based on the Bulk Transcriptome, Mendelian Randomization Analysis and Single Cell RNA Sequencing.#3753NCBI PubMed Central
• Single-cell and spatial transcriptome analysis of breast cancer tumor-associated fibroblast heterogeneity and its mediated remodeling of the tumor microenvironment.#227802NCBI PubMed Central
• Miniaturized chromatography-based lipidomics methods towards single-cell analysis#299160Springer Nature OA
• CudaMon: An R Package to Monitor NVIDIA GPUs, Showcased by Monitoring a GPU-accelerated Single-cell Analysis Workflow in R#337325Figshare
• Assessing scale and predictive diversity in models for single-cell transcriptomics based on Geneformer#416089PLOS
• Ferroptosis-Based Peripheral Immune Dysregulation and Diagnostic Signatures in Parkinson's Disease: An RNA Transcriptomic and Single-Cell Immune Sequencing Analysis.#427982NCBI PubMed Central
• Single-cell analysis of Powassan virus-infected brains reveals age-dependent neuroinflammatory crosstalk and progressive Alzheimer's-like APP/Aβ accumulation.#449746NCBI PubMed Central
• Dysregulated BCR repertoire and metabolic state of HBsAg-specific B cells in chronic hepatitis B revealed by integrated single-cell analysis.#449979NCBI PubMed Central
• Integrative analysis of single-cell multi-omics reveals heterogeneity in piriform cortex principal neurons and their selective vulnerability in Alzheimer's disease.#785447NCBI PubMed Central
• Computational methodology for analysis of cell type specific RNA isoform expression with long read sequencing#471862HAL (France)
• Nomogram outperforms gradient boosting machine for prognostic prediction of laryngeal squamous cell carcinoma: a combined analysis of SEER and single-center data.#30540NCBI PubMed Central
• Single-cell multiomics data analysis of potential receptors and therapeutic drugs for epilepsy patients comorbid with depression#123675PLOS
• Identification of Immune-Related Lactylation Genes in Rheumatoid Arthritis With Atherosclerosis: A Comprehensive Analysis Using Bulk and Single-Cell RNA Sequencing Data.#174510NCBI PubMed Central
• Multidimensional single-cell analysis of the molecular characteristics and functional pathways of Regulatory T cells in the microenvironment of HR+ breast cancer.#227876NCBI PubMed Central
• Integrative Single-Cell and Multi-Cohort Analysis of the Netrin-1 Signaling Pathway Reveals Divergent Prognostic Trends and Sex-Dimorphic Associations in Glioblastoma#290745bioRxiv / medRxiv
• Étude de l’Acquisition de la Résistance au Témozolomide du Glioblastome : identification d’une population transitoire intermédiaire#475991HAL (France)
• Identification and experimental validation of biomarkers associated with exercise in intervertebral disc degeneration through bulk RNA and single-cell RNA sequencing analysis.#610332NCBI PubMed Central
• Identifying causal genetic markers and cellular mechanisms in diabetic retinopathy through single-cell sc-eQTL analysis and Mendelian randomization#430060Figshare
• Exploring Vitamin D Signaling-Associated Biomarkers and Their Diagnostic Value in Diabetic Retinopathy: A Combined Transcriptomic and Single-Cell Analysis With Experimental Validation.#148192NCBI PubMed Central
• Integrated Bulk and Single-Cell RNA-Seq Analysis Reveals Transcriptional Activation of PTGS2 by FOS in Progression From T2DM to T2DM-Associated NAFLD.#174524NCBI PubMed Central
• Unveiling anti-atherosclerotic targets of Perilla frutescens through a multi-scale computational framework integrating network pharmacology, single-cell analysis, machine learning, and molecular dynamics.#280933NCBI PubMed Central
• Identification of common diagnostic biomarkers and immune landscapes in sepsis and acute kidney injury: a transcriptomic study integrating machine learning and single-cell analysis.#430723NCBI PubMed Central
• Elucidating the beneficial effects of gut microbiota-derived metabolites in treating hepatocellular carcinoma: an integrated network pharmacology, molecular docking, and single-cell sequencing analysis.#823560NCBI PubMed Central
• Utilizing the R2C2 Long Read Sequencing Protocol for Various Applications#983544eScholarship
• Detecting actionable mutations from matched plasma-based versus tissue next-generation sequencing in advanced non-small cell lung cancer: a retrospective single centre analysis on site#208776HAL (France)
• FKBP12 determines ligand-specific SMAD signaling in individual living endothelial cells -data#219903TUdatalib System
• CellBouncer, a unified toolkit for single-cell demultiplexing and ambient RNA analysis, reveals hominid mitochondrial incompatibilities#485176Europe PMC
• Analysis of Temporal Progression in Single-Cell Datasets / Brigitte Joanne Bouman ; Gutachter: Andrew Plested, Nil Blütghen, Uwe Ohler, Marieke Essers#664738Deutsche Nationalbibliothek
• Multi-Omics Integrative Analysis of the Aspirin-Gut-Brain-Glioma Axis: Transcriptomic, Proteomic, Epigenetic, Mendelian Randomization, and Single-Cell Transcriptomic Evidence Converges on NEO1/Hepcidin Iron Reprogramming and Ferroptosis Vulnerability#429580bioRxiv / medRxiv
• adaptive-nk-trajectories: analysis code for "CMV-associated constitutive Adaptive NK occupancy dominates human NK compartment heterogeneity, with one candidate abrupt longitudinal transition"#31563DataCite
• adaptive-nk-trajectories: analysis code for "CMV-associated constitutive Adaptive NK occupancy dominates human NK compartment heterogeneity, with one candidate abrupt longitudinal transition"#31564DataCite
• Parameter Identification in Reaction-Diffusion-Chemotaxis Systems from Single Turing Pattern Amplitudes#998012arXiv (All)
• Data Sheet 7_Analysis of 16S rRNA to evaluate taxonomic differences between salivary and intratumoral microbiota in patients affected by oral squamous cell carcinoma: a single-center pilot study.csv#395105Figshare
• ON-treatment Single-cell Analysis for the Identification of Early Tumor Response Biomarkers on Prospective Collected Serial Tumor Biopsies in Triple Negative Breast Cancer Patient During Standard Neoadjuvant Chemo-immunotherapy#363607ClinicalTrials.gov
• Additional file 2 of Elucidating the beneficial effects of gut microbiota-derived metabolites in treating hepatocellular carcinoma: an integrated network pharmacology, molecular docking, and single-cell sequencing analysis#780719Figshare
• Additional file 1 of Elucidating the beneficial effects of gut microbiota-derived metabolites in treating hepatocellular carcinoma: an integrated network pharmacology, molecular docking, and single-cell sequencing analysis#780720Figshare