spatial-transcriptomics

Documents about spatial-transcriptomics

• jsPCA: fast, scalable, and interpretable identification of spatial domains and variable genes across multi-slice and multi-sample spatial transcriptomics data#1492783HAL (France)
• Deciphering spatial heterogeneity by multimodal spatial transcriptomics modelling with SpatialModal.#442859NCBI PubMed Central
• Pan-cancer analysis of spatial transcriptomics reveals heterogeneous tumor spatial microenvironment.#223012NCBI PubMed Central
• Structural-information guided fusion for spatial domain identification from spatial transcriptomics.#396095NCBI PubMed Central
• Unveiling the role of spatial transcriptomics in the analysis of the tumor immune microenvironment (Review)#651713Europe PMC
• Trainable clustering framework for spatial transcriptomics.#266979NCBI PubMed Central
• A deep learning representation and spatial Bayesian cell-type deconvolution for spatial transcriptomics.#406424NCBI PubMed Central
• Psoriasis as a spatial immune ecosystem: insights from single-cell and spatial transcriptomics.#476867NCBI PubMed Central
• AINR: attention-guided implicit neural representations for spatial domain identification in spatial transcriptomics.#1039867NCBI PubMed Central
• Constrained convex clustering for interpretable spatial domain detection in spot-based spatial transcriptomics#1129136arXiv (All)
• spMosaic: multi-sample integration for scalable spatial domain discovery based on spatial transcriptomics.#1158739NCBI PubMed Central
• SciCore-Omics: a tri-modal foundation model unifying histology, spatial transcriptomics and language for spatial biology#337026bioRxiv / medRxiv
• The anopheles mosquito brain at spatial and single cell resolution#1399508HAL (France)
• Benchmarking sketching methods on spatial transcriptomics data.#174512NCBI PubMed Central
• Ten quick tips for spatial transcriptomics analysis.#975814NCBI PubMed Central
• FlashDeconv reveals resolution horizons in atlas-scale spatial transcriptomics#1278894bioRxiv / medRxiv
• Spatial Transcriptomics for Focal Cortical Dysplasia and Implications for Autism Spectrum Disorder#1092516ScholarlyCommons
• SpaNiche: spatial niche analysis to explore colocalization patterns and cellular interactions in spatial transcriptomics data.#258155NCBI PubMed Central
• Histology images in spatial transcriptomics: a critical evaluation of their effectiveness in spatial domain detection.#1434807NCBI PubMed Central
• Computational Frameworks for Segmentation-Free Imaging-Based Spatial Transcriptomics / Sebastian Tiesmeyer#623896Deutsche Nationalbibliothek
• Morphodynamic domains enable integration of live morphometrics and spatial transcriptomics#1120312HAL (France)
• Large-scale spatial variable gene atlas for spatial transcriptomics#797244arXiv (OAI Expanded)
• Large-scale spatial variable gene atlas for spatial transcriptomics#798658arXiv (All)
• Spatial transcriptomics elucidates localized immune responses in atherosclerotic coronary artery#1425823HAL (France)
• StPedf: Cell trajectory inference of spatial transcriptomics via spatial proximity embedding and spatial density-adaptive fusion#263308PLOS
• Spatial Transcriptomics Analysis of Macrophage-to-Myofibroblast Transition in Bronchiolitis Obliterans Following Hematopoietic Stem Cell Transplantation#393108OKAYAMA UNIVERSITY SCIENTIFIC ACHIEVEMENT REPOSITORY
• Spatial Transcriptomic Insights Into Lung Pathology And Fetal Therapy In Congenital Diaphragmatic Hernia#373130EliScholar
• Spatial organization of breast macrophage heterogeneity at the microanatomical scale#651682eScholarship
• Logistic regression for estimating functional effects with spatial transcriptomics.#193572NCBI PubMed Central
• Optimal gene panel selection for targeted spatial transcriptomics experiments.#292217NCBI PubMed Central
• Data-Adaptive Grassmann Manifold Representations for Spatial Transcriptomics Alignment#1070270arXiv (OAI Expanded)
• GATE-ST: Gene-Aware Text-image Encoder for Spatial Transcriptomics#1143291arXiv (All)
• Global scientific growth and thematic development of spatial transcriptomics in oncology research.#186030NCBI PubMed Central
• A comprehensive survey of computer vision methods for spatial transcriptomics.#227749NCBI PubMed Central
• Resolving sensitivity, specificity and signal contamination in Xenium spatial transcriptomics.#275512NCBI PubMed Central
• Spatial transcriptomics maps distinct signatures of human intermuscular adipose expansion in mice#401679bioRxiv / medRxiv
• PromptSTG: prototype-guided prompting for few-shot spatial transcriptomics annotation.#415643NCBI PubMed Central
• Hyperbolic Contrastive Learning with Entailment for Spatial Transcriptomics#1110584arXiv (OAI Expanded)
• PhySeqNet: physics-informed fluorescent foci detection for BARseq spatial transcriptomics#1298275arXiv (All)
• STORIES: learning cell fate landscapes from spatial transcriptomics using optimal transport#1329227HAL (France)
• Reference-informed spatial domain detection using weak supervision for spatial transcriptomics#485207Europe PMC
• <b>Resolving the co-occurrence and mutual exclusivity patterns of cancer cell states in HPV-negative HNSCC by integrating single-cell and spatial transcriptomics</b>#374093Figshare
• scGPD: single-cell informed gene panel design for targeted spatial transcriptomics.#30708NCBI PubMed Central
• SOAR elucidates biological insights and empowers drug discovery through spatial transcriptomics.#135953NCBI PubMed Central
• GR2ST: spatial transcriptomics prediction based on graph-enhanced multimodal contrastive learning.#170600NCBI PubMed Central
• SpaPheno: linking spatial transcriptomics to clinical phenotypes with interpretable machine learning.#209545NCBI PubMed Central
• Whole-organism spatial transcriptomics at single-cell resolution in C. elegans#226059CaltechDATA
• Spatial Transcriptomics of Human Colorectal Cancer: PTGS2 regulation of plasticity#267458Zenodo (CERN)
• The temporal architecture of the seminiferous epithelial cycle revealed by spatial transcriptomics.#338522NCBI PubMed Central
• NaVis: a virtual microscopy framework for interactive histological interrogation of spatial transcriptomics data#349746bioRxiv / medRxiv