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Comparing subsampling strategies for efficient pairwise analysis of large pathogen genomic and spatial datasets: An application to <i>Mycobacterium tuberculosis</i> transmission
Pairwise analysis of genomic and spatial data offers opportunities to identify and estimate the associations between covariates and the transmission of pathogens between individuals. However, such pairwise analyses are computationally intensive, and may not be feasible to conduct given the high dya
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