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AMRScan 2: provenance-recorded detection of antimicrobial resistance determinants in bacterial assemblies, with archived susceptibility data from NCBI Pathogen Detection
Studies that relate bacterial genomes to antimicrobial susceptibility test (AST) results need determinant calls and phenotypes that can be traced to the exact genome, software, database and source export they came from. AMRScan 2 is a rewrite of the AMRScan toolkit for this purpose. Its Nextflow wor
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