bacterial-genomics

Documents about bacterial-genomics

• Structural basis of H-NS-mediated temperature-dependent stimulation of initial growth in <i>Escherichia coli</i>#1481126PLOS
• Life Identification Numbers: A strain nomenclature approach to aid epidemiological surveillance of bacterial pathogens#258665PLOS
• The value of a prophage-borne defense system in phage–phage competition#672179PLOS
• PanDelos-plus: A parallel algorithm for computing sequence homology in pangenomic analysis#989363PLOS
• Genome analysis of <i>Lactiplantibacillus plantarum</i> and <i>Levilactobacillus brevis</i> isolated from traditionally fermented Ethiopian kocho and their probiotic properties#120233PLOS
• Genomic characterization of multidrug-resistant <i>Escherichia coli</i> isolated from gills of <i>Labeo rohita:</i> Insight into resistome, virulence and pathogenicity#313067PLOS
• Bacterial Genetics and Genomics#1333194Open Library
• Development of a rapid <i>comQ</i>-targeted quantitative polymerase chain reaction assay for specific identification and quantification of <i>Bacillus subtilis</i> subsp. <i>natto</i>#425466PLOS
• Comparative prevalence of the mercury resistance gene <i>merA</i> in human feces, food, and environmental water from Japan, Vietnam, and Ghana#672177PLOS
• Biofilm-derived curli and Z-DNA shape anti-DNA antibody responses during Salmonella infections#368466PLOS
• <i>Streptococcus didelphis</i> infection in free-ranging white-eared opossum (<i>Didelphis albiventris</i>) and Brazilian common opossum (<i>Didelphis aurita</i>): pathology, microbiologic, and genomic characterization#146542PLOS
• Direct LAMP for on-site rapid detection of <i>Vibrio parahaemolyticus</i> in shrimp (<i>Litopenaeus vannamei</i>) aquaculture water#143878PLOS
• Genomic GC Content Drifts Downward in Most Bacterial Genomes#277894Scholar Commons
• A trainable language model with potential to modulate translation rates in non-model organisms by generating upstream untranslated region sequence libraries#989357PLOS
• GeoEPred: A multimodal structure-aware geometric deep learning framework for Gram-negative bacterial secreted effector prediction with sequence semantics#1148184PLOS
• Phylogeny-aware comparative genomics of#351943PubMed
• Comparative genomics and phenotypic divergence of ERIC I and ERIC II genotypes of <i>Paenibacillus larvae</i>, the causative agent of American Foulbrood disease#453133PLOS
• Bacterial Genetics and Genomics#1191243Open Library
• Bacterial Genomes: Trees and Networks#147369Zenodo (CERN)
• Establishing Benchmark Criteria for Single Chromosome Bacterial Genome Assembly#995701DigitalCommons@University of Nebraska
• Detection of bacterial gene expression elements on Tobacco mosaic virus RNA using cDNA analysis#928018PLOS
• Resistance potentiators: Evolutionary catalysts of antibiotic resistance#345377PLOS
• Genomics and evolution of Gram-positive (Clavibacter) and Gram-negative (Pectobacterium and Dickeya) plant pathogenic bacteria#1346073ScholarSpace
• To Strepto and beyond! Large-scale bacterial genomics with a focus on pathogenic streptococci#294843JLUpub
• A novel isolated phage targeting <i>Pseudomonas aeruginosa</i> demonstrates therapeutic potential#180466PLOS
• Table 5_Oral human papillomavirus infection aligns with a coordinated bacterial microbiome inferred virulence ecology.xlsx#259823Figshare
• Table 3_Oral human papillomavirus infection aligns with a coordinated bacterial microbiome inferred virulence ecology.xlsx#259825Figshare
• Table 4_Oral human papillomavirus infection aligns with a coordinated bacterial microbiome inferred virulence ecology.xlsx#259826Figshare
• Table 13_Oral human papillomavirus infection aligns with a coordinated bacterial microbiome inferred virulence ecology.xlsx#259827Figshare
• Table 2_Oral human papillomavirus infection aligns with a coordinated bacterial microbiome inferred virulence ecology.xlsx#259828Figshare
• Table 11_Oral human papillomavirus infection aligns with a coordinated bacterial microbiome inferred virulence ecology.xlsx#259830Figshare
• Data Sheet 14_Oral human papillomavirus infection aligns with a coordinated bacterial microbiome inferred virulence ecology.fasta#259824Figshare
• Table 7_Oral human papillomavirus infection aligns with a coordinated bacterial microbiome inferred virulence ecology.xlsx#259829Figshare
• Data Sheet 15_Oral human papillomavirus infection aligns with a coordinated bacterial microbiome inferred virulence ecology.csv#259831Figshare
• Metagenomics for bacterial spot pathogen and virulence factor tracking for Ohio fresh market tomato and pepper production#259227bioRxiv / medRxiv
• An integrative multi-omics approach points to membrane composition as a key factor in <i>E. coli</i> persistence#323623PLOS
• AMRScan 2: provenance-recorded detection of antimicrobial resistance determinants in bacterial assemblies, with archived susceptibility data from NCBI Pathogen Detection#1536013arXiv (All)
• Characterization Of Pantoea ananatis: Population Genomics, Dual-Pathogen Transcriptomics, And Co-Infection Synergy With Burkholderia glumae In Rice#823330LSU Digital Commons
• In silico antimicrobial resistance profiling of 1,240 <i>Stenotrophomonas maltophilia</i> genomes: AMR gene prevalence, temporal evolution, and ST-specific associations#355225PLOS
• Contribution of nosocomial transmission to <i>Klebsiella pneumoniae</i> neonatal sepsis in Africa and South Asia: An observational study of infection clusters inferred from pathogen genomics and temporal data#180476PLOS
• Full-length genomes evolve in parallel in a long-term evolution experiment with phage φX174#1494084PLOS
• Panorama: A robust pangenome-based method for predicting and comparing biological systems across species#1079563HAL (France)
• Robust design of LAMP assays for in-field detection of major bacterial vascular diseases of banana#376013PLOS
• From climate hazards to early warning: <i>Salmonella</i> as a sentinel for the Climate–AMR–WASH nexus#477071PLOS
• Characterisation of multidrug-resistant, avian pathogenic-like <i>Escherichia coli</i> O78 from dairy-bred calves with atypical colisepticaemia#1267822PLOS
• Elucidation of Dimethyl Sulfide Assimilation in Soil Bacteria Expands the Enzymatic Landscape of Terrestrial Sulfur Cycling#280396HAL (France)
• Evidencing strain-dependency of metabolic pathways within 1,494 lactic bacteria genomes with the in silico screening Prolipipe pipeline#357572HAL (France)
• Distinct bacterial hosts, shared <i> bla _OXA-48 </i> plasmid backbones: longitudinal comparative genomics of carbapenemase-producing Enterobacterales from hospital wastewater, biofilms and patients#478511Europe PMC
• Cross-family and phage-specific gene requirements for <i>Klebsiella</i> infection revealed by scalable RB-TnSeq genetic screens#385447PLOS
• Genomic analysis unveils genome degradation events and gene flux in the emergence and persistence of S. Paratyphi A lineages.#1442512Apollo