gene-regulatory-networks

Documents about gene-regulatory-networks

• Bayesian model discovery for reverse-engineering biochemical networks from data#473121PLOS
• Exosomal gene-based predictive model and therapeutic target identification for Alzheimer’s disease: A bioinformatics analysis#385446PLOS
• Rice cold tolerance: Physiological responses, molecular regulatory networks, and improvement strategies.#289167PubMed
• Dynamics of molecular fluctuations in gene regulatory networks#824247Southampton
• KAREIDMAP: A System for Predicting and Mining Gene Regulatory Networks#70520J-STAGE (Japan)
• Benchmark Boolean Models for Gene Regulatory Networks#264285Zenodo (CERN)
• Combinatorial transcription factor interactions drive modular gene regulatory networks#293966bioRxiv / medRxiv
• Gene regulatory networks: from correlative models to causal explanations#219408PubMed Central
• Synchronous versus asynchronous modeling of gene regulatory networks#260048Infoscience
• Gene Regulatory Networks Mediate Pattern Scaling in Growing Tissues#441660bioRxiv / medRxiv
• Gene regulatory networks: from correlative models to causal explanations#221782Europe PMC
• Multimodal physical evidence uncovers interpretable gene regulatory networks for perturbation prediction#343622bioRxiv / medRxiv
• Deep and Probabilistic Models for Gene Regulatory Network Inference#381738arXiv CS
• Resolving High-Dimensional Cell States and Trajectories on Cartesian Gene Expression and Regulatory Network Representations#279804edoc-Server
• Unveiling gene perturbation effects through gene regulatory networks inference from single-cell transcriptomic data#13942PLOS
• A pyroptosis-related gene signature for the diagnosis of acute pancreatitis#28654PLOS
• A Reexamination of Noise-Driven Robustness Evolution in Gene Regulatory Networks#820560arXiv (All)
• Intermittent fasting rewires tissue-specific gene-transposable element regulatory networks.#430850NCBI PubMed Central
• Dissecting reversible and irreversible single cell state transitions from gene regulatory networks.#159826NCBI PubMed Central
• Conserved and divergent gene regulatory networks for crop drought resistance.#288973NCBI PubMed Central
• Inferring cell-specific gene regulatory networks based on causal graph embedding.#298866NCBI PubMed Central
• Stochasticity in multi-layered Quorum Sensing systems#321164Zenodo (CERN)
• Expanding gene regulatory networks from transcriptome data through graphical modeling with heterogeneous priors#369693bioRxiv / medRxiv
• STATISTICAL LEARNING METHODS FOR GENE REGULATORY NETWORK ANALYSIS AND HIP FRACTURE RISK PREDICTION#253318Digital Commons @ Michigan Tech
• Bifurcation Analysis for Gene Regulatory Networks Embedding a Toggle-Switch Model: Application to X Chromosome Inactivation#156181HAL (France)
• A comprehensive survey on graph neural networks for gene regulatory network inference.#480960NCBI PubMed Central
• Bayesian inference of gene regulatory networks at stochastic steady state#676482Europe PMC
• Decoding gene regulatory networks from single-cell RNA velocity#789835arXiv (OAI Expanded)
• Decoding gene regulatory networks from single-cell RNA velocity#793842arXiv (All)
• Gene-transcription factor regulatory networks implicate primary cilia in the evolution of vertebrate sex determination and expand models of epigenetic regulation#412823PLOS
• Integrating gene regulatory priors into Transformer attention with scTransformer for interpretable scRNA-seq analysis#267673arXiv CS
• Gene regulatory co-expression networks decipher potential lncRNA-miRNA-mRNA interactions modulating transcription regulation in neurodegeneration#432723bioRxiv / medRxiv
• Regulatory networks involved in modulating fat deposition in pigs identified by gene co-expression analysis#433307HAL (France)
• Network pharmacology and molecular simulation study on the multi-target gene regulatory mechanism of <i>Isatis indigotica</i> against hepatic inflammation#453130PLOS
• Evolutionary rewiring of the endomesoderm gene regulatory networks specify skeleton secreting cells in stony corals.#146481bioRxiv / medRxiv
• GeneSNAKE: a Python package for simulation of gene regulatory networks and perturbation-induced expression data.#152206NCBI PubMed Central
• MINI‐AC : inference of plant gene regulatory networks using bulk or single‐cell accessible chromatin profiles#178118HAL (France)
• A quasi-stationary distribution bound for fault analysis in gene regulatory networks#485179Europe PMC
• Mapping disease-regulatory flux through eQTL-based causal gene networks: a complex-trait framework applied to coronary artery disease#1034640arXiv (All)
• Unraveling the role of ChREBP in lung adenocarcinoma: Expression, regulatory networks, and potential functional impact#146546PLOS
• Visualization and Analysis of Mirnas Implicated in Amyotrophic Lateral Sclerosis Within Gene Regulatory Pathways#1027242İzmir Yüksek Teknoloji Enstitüsü
• Constructing Gene Co-functional and Co-regulatory Networks from Public Transcriptomes using Condition-Specific Ensemble Co-expression#141233bioRxiv / medRxiv
• Single-cell gene regulatory networks characterize colonic stem and immune cell homeostasis in Nr4a1 knockout mice.#1001104NCBI PubMed Central
• UNified FramewOrk for reguLatory Dynamics (UNFOLD): Dissecting robustness, plasticity, evolvability and canalisation of biological function#236520PLOS
• Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks#6272OpenAlex
• CoryneRegNet 3.0 - An interactive systems biology platform for the analysis of gene regulatory networks in corynebacteria and Escherichia coli#492577Bielefeld Pub
• Transcriptome sequencing combined with experimental verification to explore potential key genes related to uric acid in diabetic retinopathy#251490PLOS
• Dissecting Human Gene Regulatory Networks with Barcoded CRISPR Screens#634808eScholarship
• Transcriptional Changes in Isolated Human Adipocytes During Obesity#905371ClinicalTrials.gov
• Genetic regulatory axis between AGR2 and ESR1 promotes breast cancer progression#331254PLOS