genome-assembly

Documents about genome-assembly

• Genome assembly of Astatotilapia latifasciata uncovers B chromosome-linked chromatin reorganization.#662825NCBI PubMed Central
• From contiguity to accuracy: Validation-centered perspectives on bacterial genome assembly.#988457NCBI PubMed Central
• Sequencing of Chenopodium A-Genome Diploids to Identify Potential Mechanisms of Speciation: A Preliminary Study#343664BYU ScholarsArchive
• Impact of wet- and dry-lab workflows on genome assembly, typing and enterotoxin gene detection in whole-genome sequencing of foodborne Staphylococcus aureus#395323HAL (France)
• Chromosome-level genome assembly of the Erythrina Gall Wasp, Quadrastichus erythrinae (Hymenoptera: Eulophidae)#131005bioRxiv / medRxiv
• BonoboFlow: Streamlined Viral Genome Assembly and Haplotype Reconstruction from Nanopore Reads#247127LSHTM Data Compass
• AIEdit: Alignment-free genome assembly polisher trained on spaced seed match patterns.#255364NCBI PubMed Central
• Assembly and comparative analysis of the complete mitochondrial genome of Holmskioldia sanguinea.#330869NCBI PubMed Central
• Data file 6. Mitochondrial genome assembly files generated using SPAdes and GetOrganelle#478472Figshare
• A chromosome-level genome assembly of two-spotted cricket, Gryllus bimaculatus (Orthoptera: Grylloidea).#157222NCBI PubMed Central
• A high-quality, chromosome-scale genome assembly of the shade-tolerant wild rice, Oryza granulata#373554bioRxiv / medRxiv
• A Chromosome-Level Genome Assembly of <em>Coffea arabica</em> L. var. ‘Kona Typica’#373961DigitalCommons@University of Nebraska
• High-quality draft genome assembly and functional annotation of Musa textilis cv. Inosa.#392849NCBI PubMed Central
• High-quality chromosome-scale genome assemblies of 29 maize inbred lines of European breeding relevance#144938HAL (France)
• The Genome Sequence of the Hemlock Woolly Adelgid, <i>Adelges tsugae</i> Annand 1924#325562DigitalCommons@USU
• Gene Annotation of the Haplotype-Resolved Genome Assembly of <i>Dictyophora echinovolvata</i> Strain D89This dataset contains the gene annotation files for the haplotype-resolved genome assembly of <i>Dictyophora echinovolvata</i> strain D89, including structural gene models and related annotation information.This dataset contains the gene annotation files for the haplotype-resolved genome assembly of Dictyophora echinovolvata strain D89, including structural gene models and related annotation information.#264737Figshare
• Reference Genome Assembly of a Tetraploid Accession of the Tuber Crop Tropaeolum tuberosum.#218989NCBI PubMed Central
• A chromosome-level genome assembly of SAGS (<i>Anisodus tanguticus (Maxim.) </i>Pascher)#238709Figshare
• Draft genome assembly of the Woolly bottlebrush (Greyia radlkoferi) using Pacbio long-read sequencing technology.#314131bioRxiv / medRxiv
• Assembly, annotation, and comparative analysis of the first complete mitochondrial genome of Pennisetum sinese.#434011NCBI PubMed Central
• Genomic datasets of Laminaria digitata: Paired-end reads from dd-RADseq, reference genome assembly and filtered VCF#971341ISTA Publications
• A high-quality fungal genome assembly resolved from a sample accidentally contaminated by multiple taxa#456185University of Pretoria Repository
• Chromosome-level genome assembly of Phoebe chekiangensis, an endemic and endangered tree in east Asia.#263258NCBI PubMed Central
• A comprehensive reference genome assembly dataset of birds inhabiting Denmark, Greenland, and the Faroe Islands#391826HAL (France)
• Assembly and comparative analysis of the complete mitochondrial genome of the endangered plant Fraxinus mandshurica.#610394NCBI PubMed Central
• Haplotype-resolved genome assembly of a male Dioscorea alata cultivar reveals the structure and evolution of sex chromosomes#624627HAL (France)
• AIEdit: Alignment-free genome assembly polisher trained on spaced seed match patterns#161664Unpaywall
• Chromosome-level genome assembly and annotation of the lesser grain borer, Rhyzopertha dominica (Fabricius) (Coleoptera: Bostrycidae).#251371NCBI PubMed Central
• A new genome assembly of the pea cultivar ‘Caméor’ provides resources for functional genomics and genetics#411780HAL (France)
• Chromosome-level genome assembly and annotation of the emblematic silver-lipped pearl oyster Pinctada maxima Jameson 1901#157599HAL (France)
• S. Table4, Assembly statistics of <i>Lacticaseibacillus paracasei </i>TOKAI 83m#337332Figshare
• Near-chromosome level genome assembly of the fruit pest Drosophila suzukii using long-read sequencing#425428Open Access LMU
• A chromosome-level genome assembly for the beach-spawning California grunion, Leuresthes tenuis#482753Europe PMC
• Telomere-to-telomere genome assembly and a mutant library empower functional genomics and genetic improvement in Cucurbita moschata.#190013NCBI PubMed Central
• Chromosome-level genome assembly and population genomics unveil strigolactone-regulated growth adaptation in the mycoheterotrophic orchid Gastrodia elata.#298893NCBI PubMed Central
• Contrasting regulation of protein-coding genes and lncRNA homeologs in allotetraploid <i>Coffea arabica</i>#436091Figshare
• Telomere-to-telomere genome assembly of Microsporidia sp. MB, a microsporidian symbiont of Anopheles coluzzii isolated from Burkina Faso.#186024NCBI PubMed Central
• De novo genome sequence assembly of the model algal endosymbiont Micractinium conductrix derived from its host Paramecium bursaria 186b#367261Europe PMC
• Haplotype-resolved genome assembly of a male Dioscorea alata cultivar reveals the structure and evolution of young sex chromosomes.#465382NCBI PubMed Central
• Detailed re-analysis of satellitome mapping facilitated by the telomere-to-telomere (T2T) assembly of bread wheat genome.#615928NCBI PubMed Central
• Correction to: Searching for shared epigenetic clocks: evaluating ultra-conserved markers in a de novo genome assembly of the albacore tuna#175834HAL (France)
• Chromosome-level genome assembly of the Erythrina Gall Wasp, <i>Quadrastichus erythrinae</i> (Hymenoptera: Eulophidae)#133141Unpaywall
• A chromosome-scale genome assembly of Hordeum erectifolium: genomic, transcriptomic and anatomical adaptations to drought in a wild barley relative.#138600NCBI PubMed Central
• Foundational genomic resources for date palm (Phoenix dactylifera): A gap-free, telomere-to-telomere phased assembly of Ajwa and 19 high-quality genome assemblies#643090HAL (France)
• The Revised Diploid Genome Sequence of an Individual Human: An Optimized Assembly Workflow for Scaling of near Telomere-to-Telomere Assemblies#264598bioRxiv / medRxiv
• <b>High-quality Genome Assembly and Annotation of Inactivated Animal Vaccine Bacteria Strains in South Korea</b>#359839Figshare
• Assembly and comparative analysis of the multipartite mitochondrial genome of Curcuma wenyujin reveals sequence divergence, structural variation, and phylogenetic placement within Commelinales.#437075NCBI PubMed Central
• Data file 8. Read-mapping, sequencing-depth, and assembly-validation results#478469Figshare
• Genome assembly, structural and functional annotation of orange rust (Puccinia kuehnii) and brown rust (Puccinia melanocephala), phytopathogens of sugarcane#1055124Repositorio Institucional Universidad del Valle
• A reference genome assembly for the continentally distributed ring-necked snake, Diadophis punctatus#634715eScholarship