phylogenetic-analysis

Documents about phylogenetic-analysis

• Effector loss and gain drives host range at a fitness cost#425473PLOS
• Phylogenetic double placement of mixed samples.#684052eScholarship
• HIV Sequencing After Treatment Interruption to Identify the Clinically Relevant Anatomical Reservoir#911763ClinicalTrials.gov
• BEAST: Bayesian evolutionary analysis by sampling trees#6469OpenAlex
• Phylogenetic analysis of the recent species of the genus Homo : dispersals, evolution, extinction#231562HAL (France)
• TIPP-SD: A new method for species detection in microbiomes#236523PLOS
• Evidence of adenovirus host-switching in a Florida Anolis community#348754RUcore, Rutgers University Community Repository
• Integrative analyses reveal the evolution of the Old World Swallowtail in the Palearctic#351925PLOS
• Whole-genome characterization of halotolerant <i>Enterobacter roggenkampii</i> OSNO4 and its potential for climate-resilient agriculture#292693PLOS
• Genomic epidemiology and genetic characteristics of clinical Campylobacter species cocirculating in West Bengal, India, 2019, using whole genome analysis#379023OKAYAMA UNIVERSITY SCIENTIFIC ACHIEVEMENT REPOSITORY
• Isolation, antibiogram and whole genome sequence analysis of <i>Pasteurella multocida</i> type A from layer birds#626375PLOS
• Symbiotic bacteria may support calcium carbonate precipitation in the Gulf toadfish#197009PLOS
• Sri Lankan maternal ancestry reveals early migrations from Africa along the Indian Ocean#228199PLOS
• Three new entomopathogenic fungi (Hypocreales, Cordycipitaceae) in Fodingshan Nature Reserve, Guizhou, China#454456GBIF Registry
• Three new entomopathogenic fungi (Hypocreales, Cordycipitaceae) in Fodingshan Nature Reserve, Guizhou, China#481484ARPHA OAI-PMH Endpoint
• The spatial structure of dengue transmission in Kamphaeng Phet Thailand#626380PLOS
• Spatiotemporal dynamics and phylogeography of HCoV-NL63 and HCoV-OC43 in Thailand, 2024–2025#672180PLOS
• Occurance of invasive thrips species, Thrips parvispinus in pulse ecosystems:new host reocrds, DNA barcoding, phylogenetic analysis and diversity assessment#363838Figshare
• Outbreak of dengue fever in Ghana: The emergence of DENV-1 serotype#172207PLOS
• Not an infection: Endogenous circoviral elements underlie BFDV detections in Old World vultures#281558PLOS
• Emergence and phylogeography of the dengue vector <i>Aedes aegypti</i> in Southeastern Iran#473118PLOS
• Pan genome clustering identifies a novel mosaic prophage specific to <i>Salmonella</i> Enteritidis lineage associated with the invasive disease in India#626383PLOS
• Taxonomy and phylogeny of five novel Trichoderma (Hypocreaceae, Hypocreales) species isolated from decaying wood in China#231247GBIF Registry
• Taxonomy and phylogeny of five novel Trichoderma (Hypocreaceae, Hypocreales) species isolated from decaying wood in China#259162ARPHA OAI-PMH Endpoint
• Reassessment of Incasarus (Hymenoptera: Andrenidae: Protandrenini) with the description of two new species (Hymenoptera: Andrenidae)#374273GBIF Registry
• Supporting data for "Surveillance of Coronaviruses and Astroviruses in Wild Aquatic Birds in Hong Kong: Expanded Genetic Diversity and Discovery of Novel Virus"#333575Figshare
• A snapshot of HIV-1 genetic diversity in Dominican Republic in 2024: Predominance of the B_Car lineage and first description of a CRF02-AG isolate#165983PLOS
• MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods#6288OpenAlex
• Validating the classics: Accurate reference gene panel for reliable RT-qPCR in Porifera#209847PLOS
• Four new species of Microdochium (Microdochiaceae, Xylariales) based on morphology and multilocus phylogeny from Hainan, China#250507GBIF Registry
• Detection and genetic characterization of Tembusu virus and other flaviviruses from mosquitoes in Lao PDR#269669PLOS
• Four new species of Microdochium (Microdochiaceae, Xylariales) based on morphology and multilocus phylogeny from Hainan, China#271220ARPHA OAI-PMH Endpoint
• Fulvifomes paraensis sp. nov. (Hymenochaetaceae, Basidiomycota), a new species from the floodplain forests of the Brazilian Amazon#311645GBIF Registry
• Bacterial genome reconstruction and community profiling in Neotropical Drosophila#315017HAL (France)
• Whole-genome sequencing reveals a previously unrecognized measles virus cluster in Burundi#327595PLOS
• Four new species of Pseudoplagiostoma (Pseudoplagiostomataceae, Diaporthales) based on morphology and multi-locus phylogeny from China#650101ARPHA OAI-PMH Endpoint
• Genome-wide analysis of the invasive fungal pathogen <i>Neopestalotiopsis</i> reveals high genomic diversity, effector repertoires, and the assessment of fungicide resistance risks#232908PLOS
• Analysis of the genetic and phylogenetic context of Escherichia coli O77g:H18 associated with clustered cases of HUS in France in 2025#137540HAL (France)
• Near-complete genome sequences of a rice necrosis mosaic virus isolate infecting rice in Argentina#325976HAL (France)
• Unravelling the genomic epidemiology and antigenic evolution of Chandipura virus: A slow-evolving neurotropic threat#425476PLOS
• Assembly and comparative analysis of the multipartite mitochondrial genome of Curcuma wenyujin reveals sequence divergence, structural variation, and phylogenetic placement within Commelinales.#437075NCBI PubMed Central
• Hypervirulence-associated pseudo-compound transposons as fundamental mobile units driving cross-species virulence dissemination in Enterobacteriaceae#631434PLOS
• Three new species of Colletotrichum (Glomerellaceae, Glomerellales) based on morphology and multilocus phylogeny from Fujian, China#650081ARPHA OAI-PMH Endpoint
• Evolutionary adaptation and mitogenomic diversity of spiders associated with <i>Nepenthes smilesii</i> Pitcher Plants in Thailand#152678PLOS
• Shedding light on the evolution of wood anatomical traits in some Myrtaceae species from subtropical Brazil#166467Dialnet
• A morphological and phylogenetic analysis of dematiaceous hyphomycete strains of Distoseptispora (Distoseptisporaceae, Distoseptisporales) and Kirschsteiniothelia (Kirschsteiniotheliaceae, Pleosporales) in southern China#231251GBIF Registry
• A new extremophile species of Pseudocandona (Crustacea, Ostracoda) from a sulfidic cave in Albania#246955GBIF Registry
• A morphological and phylogenetic analysis of dematiaceous hyphomycete strains of Distoseptispora (Distoseptisporaceae, Distoseptisporales) and Kirschsteiniothelia (Kirschsteiniotheliaceae, Pleosporales) in southern China#259161ARPHA OAI-PMH Endpoint
• RNA metagenomic profiling of mosquito viromes associated with Vector-Borne diseases in Quebec, Canada#263303PLOS
• A new extremophile species of Pseudocandona (Crustacea, Ostracoda) from a sulfidic cave in Albania#271212ARPHA OAI-PMH Endpoint