phylogenetic-analysis

Documents about phylogenetic-analysis

• A statistical framework for comparing epidemic forests#248068PLOS
• PAML 4: Phylogenetic Analysis by Maximum Likelihood#6440OpenAlex
• Beyond traditional outbreak investigation: Using genomic data for enhanced detection of COVID-19 disease clusters in Utah#351927PLOS
• The typhoid Mary legacy: Genomic epidemiology uncovers contemporary carriage dynamics across two decades of enteric fever surveillance in England and Wales#136443PLOS
• DENcode: A model for haplotype-informed transmission probability of dengue virus#209836PLOS
• RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies#6301OpenAlex
• The neighbor-joining method: a new method for reconstructing phylogenetic trees.#6268OpenAlex
• Global spread and evolutionary trajectories of HIV-1 CRF01_AE: Insights from phylogenetic analysis#1252694PLOS
• Expansion of the geranylgeranyl pyrophosphate synthase gene family underlies the evolution of terpenoid biosynthesis in termites#136452PLOS
• Phylogenetic analysis of the genus Taphrina: proposal of one new genus and seven new species (Taphrinales, Taphrinomycetes) from China#632426ARPHA OAI-PMH Endpoint
• PCR-based detection and phylogenetic analysis of <i>Candidatus</i> Liberibacter asiaticus in citrus orchards across Nepal#232917PLOS
• upsML: A high-accuracy machine learning classifier for predicting <i>Plasmodium falciparum var</i> gene upstream groups#18891PLOS
• Comparative analysis of seven types of phosphate transporters in forty species from the phylogenetic and transcriptomic perspective#214333PLOS
• Integrated epidemiologic investigation and genomic confirmation of a <i>Klebsiella pneumoniae</i> neonatal sepsis outbreak in Botswana#281553PLOS
• Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis#6504OpenAlex
• DNA sequences, alignment and phylogenetic tree associated with the phylogenetic analysis of Strombomonas, Trachelomonas, and Parastrombomonas#391091Dane Badawcze UW Dataverse OAI Archive
• Retrospective Phylogenetic Analysis of Mayaro Virus, French Guiana, 1996–2024#268482HAL (France)
• KSHV Genome in Saliva, Whole Blood and Kaposi's Sarcoma Biopsy Specimens in Republic of Congo: Phylogenetic Analysis and an APOBEC3B Mutational Signature#370905HAL (France)
• Hydrangea medogensis (Hydrangeaceae), a new species from Xizang (Tibet), China#977958ARPHA OAI-PMH Endpoint
• Phylogenetic and Genomic Feature Analysis of Cutaneous Nocardia Isolates.#480931NCBI PubMed Central
• Assessing the impact of phylogenetic reconstruction error on genetic reassortment inference in segmented viruses#1427394PLOS
• Global Bibliometric and Phylogenetic Analysis of mcr-Mediated Colistin Resistance.#388950NCBI PubMed Central
• Genomic and phylogenetic characterization of severe fever with thrombocytopenia syndrome virus in companion animals in Korea, 2023–2024#258671PLOS
• Phylogenetic and Taxonomic study of a new aquatic alga, Pleurastrum gracilis sp. nov. (Volvocales, Chlorophyta), from the Qinghai Lake#1194072ARPHA OAI-PMH Endpoint
• Siphonophore genome structure and the evolution of functional specialization#335927PLOS
• An entropy-based framework for genomic variability analysis: A South American case study of human papillomavirus#187825PLOS
• A deep genetic structure phylogenomically frames the closest algal relatives of land plants#1538832PLOS
• Phylogenetic and Taxonomic study of a new aquatic alga, Pleurastrum gracilis sp. nov. (Volvocales, Chlorophyta), from the Qinghai Lake#1090270GBIF Registry
• Endogenous viral elements trace the ancient origins and early evolution of the <i>Caulimoviridae</i>#316312PLOS
• Rapid and consistent genetic clustering of environmental <i>Legionella pneumophila</i> isolates using accessible single-step WGS analysis tools#446581PLOS
• Genomic diversity, host associations, and tissue tropism of Hydrangea ringspot virus: A global and regional perspective#1252689PLOS
• Characterization and Phylogenetic Analysis of the Chloroplast Genome of Elaeagnus oxycarpa Schltdl.#12931NCBI PubMed Central
• Morphological phylogenetic analysis of the Family Glyphocrangonidae Smith, 1884 (Decapoda: Caridea)#384574GBIF Registry
• Phylogenetic tree of ML analysis from the concatenated ITS-28S sequences of Peniophoraceae taxa#456751Figshare
• Insights on Using Morphologic Data for Phylogenetic Analysis in Sedges (Cyperaceae)#484706BioMed Central
• Underlying data for comparative genomics, phylogenetic analysis, and ANI analysis of <i>Flavivirga</i> sp. 57AJ16#363837Figshare
• MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0#6275OpenAlex
• Three new species of Marasmius (Agaricales, Basidiomycota) from southwestern China#370428GBIF Registry
• Astragalus baimaensis (Fabaceae), a new species from Yunnan, China#441545ARPHA OAI-PMH Endpoint
• MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment#6483OpenAlex
• Systematics of the Calotes irawadi complex (Squamata, Agamidae) with two newly described species from Thailand#253722GBIF Registry
• Systematics of the Calotes irawadi complex (Squamata, Agamidae) with two newly described species from Thailand#271233ARPHA OAI-PMH Endpoint
• Climatic niche properties shape treefrog diversity#158305PLOS
• Functional group classification using consensus clustering#180471PLOS
• Comprehensive Genomic, Mutation, Phylogenetic, and Statistical Analysis of the Monkeypox Virus Across Multiple Countries.#247598NCBI PubMed Central
• Rapid Communication Phylogenetic analysis of chikungunya virus in travellers returning from La Reunion Island#301201HAL (France)
• Morphology and phylogeny of <i>Avicennia marina</i> (Forssk.) Vierh. in Iran#348438PLOS
• Three new species of Marasmius (Agaricales, Basidiomycota) from southwestern China#394128ARPHA OAI-PMH Endpoint
• GrassTop: Grassmannian k-mer Topology for Viral Classification and Phylogenetic Analysis#1123242arXiv (OAI Expanded)
• MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0#6318OpenAlex