rna-seq

Documents about rna-seq

• Sepsis Multiomic Analysis & Risk sTratification in China#862367ClinicalTrials.gov
• Conditional polygenic enrichment distinguishes causal from tagging disease-critical cell populations in single-cell RNA-seq#1029383bioRxiv / medRxiv
• Simulated data sets for: seqwrap: an R package for flexible iterative fitting of high-dimensional data#921238DataverseNO Dataverse OAI Archive
• Computational Identification of Repurposable Drug Candidates for Psoriatic Arthritis via Single-Cell RNA Sequencing of Synovial Tissue#174079Zenodo (CERN)
• Single-nucleus RNA-Seq of human and rat cardiomyocytes identifies shared and distinct regulators and features of ageing and disease#418125KU Leuven RDR Dataverse OAI Archive
• Cerebrovascular Single-Nucleus RNA-Seq Reveals Heat Shock Activation and Vascular Remodeling in Alzheimer's Disease and Primary Tauopathies#405058bioRxiv / medRxiv
• Mining RNA‐seq data reveals the massive regulon of GcvB small RNA and its physiological significance in maintaining amino acid homeostasis in Escherichia coli#624836HAL (France)
• Intramacrophage RIL-seq uncovers an RNA antagonist of the Salmonella virulence-associated small RNA PinT / Hoda Kooshapour, Gianluca Matera, Elisa Venturini, Leona Metka, Thorsten Bischler, Jörg Vogel, Alexander J. Westermann#1015040Deutsche Nationalbibliothek
• Bacillus velezensis EU07 suppresses Fusarium graminearum via transcriptomic reprogramming#315272Muğla Sıtkı Koçman University Institutional Repository
• Circadian reprogramming of inflammation and metabolism in chronic kidney disease#784392Europe PMC
• GSVA: gene set variation analysis for microarray and RNA-Seq data#6422OpenAlex
• Comparative Analyses of Transcriptome Data from Beef Cattle Persistently Infected with Bovine Viral Diarrhea Virus#921645DigitalCommons@University of Nebraska
• Full-length transcriptome assembly from RNA-Seq data without a reference genome#6726OpenAlex
• Blood-based RNA-Seq of 5412 individuals with rare disease identifies new candidate diagnoses in the National Genomic Research Library#67984bioRxiv / medRxiv
• Single-Cell-Validated Transcriptomic Proxies for the Maas Meningioma Microenvironment Risk Continuum: An NF2-Dependent Signal Attenuated Below Detectability in Bulk RNA-seq#230272bioRxiv / medRxiv
• Temporal Layering Of Extracellular Matrix Programs Defines Osteogenic Maturation In Human Mesenchymal Stromal Cells#383283Zenodo (CERN)
• Source data for the supplementary tables#614837Figshare
• RNA-Seq Analysis of Broiler Liver Transcriptome Reveals Novel Responses to High Ambient Temperature#964189ISUDR
• Blood-based RNA-Seq of 5412 individuals with rare disease identifies new candidate diagnoses in the National Genomic Research Library#130540Unpaywall
• A Meta-Analysis of the Effects of Acute Sleep Deprivation on the Cortical Transcriptome in Rodent Models#250560Europe PMC
• Multi-modal data analysis from scRNA-seq data: RNA velocity analysis and cancer clone labelling from single nucleotide variants / Valérie Marot-Lassauzaie#1038041Deutsche Nationalbibliothek
• Single-cell RNA-seq and machine learning identify HMGN2 as a lactylation-associated hub gene in heart failure#1040236PLOS
• Longitudinal Single-Cell RNA-seq Profiling of Lung Cell Phenotypes, Signaling, and Cross-talk During Fibrosis Resolution#161713Unpaywall
• Integrated Bulk and Single-Cell RNA-Seq Analysis Reveals Transcriptional Activation of PTGS2 by FOS in Progression From T2DM to T2DM-Associated NAFLD.#174524NCBI PubMed Central
• RNA-seq gene expression count data for: Multidimensional Mucosal Transcriptomic Variation at Diagnosis in Colonic Inflammatory Bowel Disease#336835api.researchdata.se
• Transcriptomic characterization of key psoriasis-associated genes based on single-cell RNA-seq and machine learning#365147PLOS
• Cell‐specific transcriptomics and knockout reveal aquaporin function in grass stomatal movements#430222HAL (France)
• A systematic benchmark of bioinformatics methods for single-cell and spatial RNA-seq Nanopore long-read data#669996HAL (France)
• Identification and Validation of a Two-Gene NK Cell-Related Risk Model for COPD: Integration of Single-Cell and Bulk RNA-Seq Analysis.#923424NCBI PubMed Central
• Transcriptomic and Genomic Insights Into Nutrient Stress Responses and Subgenome Evolution in Chenopodium#451399BYU ScholarsArchive
• Processed Seurat object of the published tomato adventitious root single-cell atlas#612316Figshare
• Single-Cell and Spatial Omics Technologies in Rice Abiotic Stress Biology: A Methodological Review#676130Europe PMC
• Characterization of Resistance to Bacterial Panicle Blight in Rice: A Genetic and Transcriptomic Approach#823345LSU Digital Commons
• Single-cell RNA-seq and in vitro study reveal Fusobacterium nucleatum impairs β-cell identity in type 2 diabetes via the NF-κB-CDKN1C axis.#25715NCBI PubMed Central
• Light-Dependent Temporal Reprogramming of Alternative Splicing Dynamics Under Salt Stress in Sweet Potato (Ipomoea batatas [L]. Lam)#231356Europe PMC
• Population-level transcriptomic datasets from two benthic invertebrates exposed to long-term experimental warming and acidification#201481ARPHA OAI-PMH Endpoint
• Dados clínicos, moleculares e de resposta a fármacos de amostras de leucemia linfóide aguda pediátrica#236650Repositório de Dados de Pesquisa da Unicamp Dataverse OAI Archive
• Identifying Relevant Covariates in RNA-seq Analysis by Pseudo-Variable Augmentation#285361ODU Digital Commons
• Physiological and Transcriptomic Responses to Cold Stress in Taiwan Loach (<i>Paramisgurnus dabryanus</i> ssp. Taiwan)#676155Europe PMC
• Mycoviruses diversity in the black kōji mold, Aspergillus luchuensis (section Nigri) isolated from liquor-production environments in Japan#194805OKAYAMA UNIVERSITY SCIENTIFIC ACHIEVEMENT REPOSITORY
• An RNA-seq data resource for time-of-day-dependent cold responses in sorghum and foxtail millet#212924Figshare
• DanioDecima: a DNA-sequence-to-function model of zebrafish embryogenesis — code and model checkpoints#264286Zenodo (CERN)
• Integrated high-throughput miRNomics and lipidomics in mice with altered lipoprotein metabolism#284489IRIS
• Study on the Mechanism of Neurodevelopment Dysplasia of Fetal Brain Caused by ASNS Gene Mutation#847487ClinicalTrials.gov
• Table 1_Integrative transcriptomic and proteomic analysis reveals the regulatory mechanisms underlying oilseed rape resistance to Leptosphaeria biglobosa.docx#367148Figshare
• Transcriptome analysis of 3×Tg-AD mice exacerbated by HFD reveals novel molecular targets of Dendrobine protection#139681Zenodo (CERN)
• DNA methylation around transcription start sites is not globally associated with transcription in the grain of natural and synthetic hexaploid wheat#155959HAL (France)
• Transcriptomic landscapes of tissue-specific color transition in eggplant reveal regulatory roles of lncRNAs and alternative splicing in anthocyanin biosynthesis#235423IRIS
• Uncovering the molecular landscape of young-onset diffuse gastric cancer: A relieff-based feature selection analysis on RNA-Seq data#434557PLOS
• adaptive-nk-trajectories: analysis code for "CMV-associated constitutive Adaptive NK occupancy dominates human NK compartment heterogeneity, with one candidate abrupt longitudinal transition"#31563DataCite