single-cell-rna-seq

Documents about single-cell-rna-seq

• PIASO tutorial and processed single-cell omics datasets#124827DataCite
• PIASO tutorial and processed single-cell omics datasets#124828DataCite
• Defining endothelial cell functional heterogeneity and plasticity using single-cell RNA-sequencing#643704Harvard DASH
• Analysis scripts for the tomato adventitious root single-cell and single-nucleus study#614838Figshare
• Finding stable clusterings of single-cell RNA-seq data#310908bioRxiv / medRxiv
• Suco - PBMC#176241Zenodo (CERN)
• Identification of cell barcodes from long-read single-cell RNA-seq with BLAZE#211646Ora Oxford University Research
• Expression of ACTR3 in cervical cancer and impact on immune cell infiltration and prognosis: A comprehensive analysis based on bulk RNA-Seq and single-cell RNA-Seq.#174640NCBI PubMed Central
• Saturation-seq integrates single-cell saturation genome editing and RNA-seq to quantify NFE2L2 (NRF2) variant effects#422366bioRxiv / medRxiv
• Longitudinal Single-Cell RNA-seq Profiling of Lung Cell Phenotypes, Signaling, and Cross-talk During Fibrosis Resolution#158252bioRxiv / medRxiv
• Bioinformatics analysis and single-cell RNA sequencing: elucidating the ubiquitination pathways and key enzymes in lung adenocarcinoma#935980Repositorio de Universidad Autónoma de Chile.
• SCSEQ: A web tool for analyzing single-cell RNA-seq data.#157914NCBI PubMed Central
• Whole-animal multiplexed single-cell RNA-seq reveals transcriptional shifts across Clytia medusa cell types#677164HAL (France)
• Conditional polygenic enrichment distinguishes causal from tagging disease-critical cell populations in single-cell RNA-seq#1029383bioRxiv / medRxiv
• Computational Identification of Repurposable Drug Candidates for Psoriatic Arthritis via Single-Cell RNA Sequencing of Synovial Tissue#174079Zenodo (CERN)
• cellGeometry: ultra-fast single-cell deconvolution of bulk RNA-Seq using a geometric solution#273237Europe PMC
• scVGAE: A ZINB-Based Variational Graph Autoencoder for Single-Cell RNA-Seq Imputation#623180arXiv (OAI Expanded)
• scVGAE: A ZINB-Based Variational Graph Autoencoder for Single-Cell RNA-Seq Imputation#625453arXiv (All)
• A systematic benchmark of bioinformatics methods for single-cell and spatial RNA-seq Nanopore long-read data#669996HAL (France)
• Processed Seurat object of the published tomato adventitious root single-cell atlas#612316Figshare
• Single-Cell and Spatial Omics Technologies in Rice Abiotic Stress Biology: A Methodological Review#676130Europe PMC
• Publisher Correction: A general and flexible method for signal extraction from single-cell RNA-seq data#20090DOAJ
• Supporting data for: Multi-tissue mRNA-seq, miRNA-seq and single-cell RNA-seq data from heat-stressed lactating Holstein cows#384347Figshare
• NEXT-scASV: a Nextflow pipeline for allele-specific variant calling from single-cell RNA-seq data.#159864NCBI PubMed Central
• GxP-Ready Single-Cell RNA-seq and Spatial Transcriptomics End-to-End Pipeline for Clinical Research.#371402NCBI PubMed Central
• Bulk and single-cell RNA-seq analyses characterize a DBP-related circadian signature in ischemic stroke.#442885NCBI PubMed Central
• scEVE: a single-cell RNA-seq ensemble clustering algorithm capitalizing on the differences of predictions between multiple clustering methods#796386HAL (France)
• Single-nucleus RNA-Seq of human and rat cardiomyocytes identifies shared and distinct regulators and features of ageing and disease#418125KU Leuven RDR Dataverse OAI Archive
• The Effect of Oncogenic Alterations on Phenotype Profiles in Colorectal Cancer Cells – a Pooled Single-Cell Screen#322212edoc-Server
• Longitudinal Single-Cell RNA-seq Profiling of Lung Cell Phenotypes, Signaling, and Cross-talk During Fibrosis Resolution#161713Unpaywall
• Transcriptomic characterization of key psoriasis-associated genes based on single-cell RNA-seq and machine learning#365147PLOS
• Identification and Validation of a Two-Gene NK Cell-Related Risk Model for COPD: Integration of Single-Cell and Bulk RNA-Seq Analysis.#923424NCBI PubMed Central
• Single-cell RNA-seq and in vitro study reveal Fusobacterium nucleatum impairs β-cell identity in type 2 diabetes via the NF-κB-CDKN1C axis.#25715NCBI PubMed Central
• Single-Cell-Validated Transcriptomic Proxies for the Maas Meningioma Microenvironment Risk Continuum: An NF2-Dependent Signal Attenuated Below Detectability in Bulk RNA-seq#230272bioRxiv / medRxiv
• Source data for the supplementary tables#614837Figshare
• Single-cell RNA-seq and machine learning identify HMGN2 as a lactylation-associated hub gene in heart failure#1040236PLOS
• Integrated Bulk and Single-Cell RNA-Seq Analysis Reveals Transcriptional Activation of PTGS2 by FOS in Progression From T2DM to T2DM-Associated NAFLD.#174524NCBI PubMed Central
• Table 1_Identification of a lactylation-related gene signature in microsatellite stable gastric cancer based on bulk and single-cell RNA-seq.xlsx#210844Figshare
• <b>Resolving the co-occurrence and mutual exclusivity patterns of cancer cell states in HPV-negative HNSCC by integrating single-cell and spatial transcriptomics</b>#374093Figshare
• Compositional Expansion of the Activated Myofibroblast Cell State in Hidradenitis Suppurativa, Replicated Across Two Independent Single-Cell Datasets, with a Mixed Matrix and Inflammatory Composition and Mechanism-Anchored Non-Kinase Antifibrotic Candidates#444219Zenodo (CERN)
• DanioDecima: a DNA-sequence-to-function model of zebrafish embryogenesis — code and model checkpoints#264286Zenodo (CERN)
• Study on the Mechanism of Neurodevelopment Dysplasia of Fetal Brain Caused by ASNS Gene Mutation#847487ClinicalTrials.gov
• adaptive-nk-trajectories: analysis code for "CMV-associated constitutive Adaptive NK occupancy dominates human NK compartment heterogeneity, with one candidate abrupt longitudinal transition"#31563DataCite
• adaptive-nk-trajectories: analysis code for "CMV-associated constitutive Adaptive NK occupancy dominates human NK compartment heterogeneity, with one candidate abrupt longitudinal transition"#31564DataCite
• Methods and Compositions for Treatment and Patient Stratification of Fibrotic Disease by Reversal or Reprogramming of an SPP1-Positive, TREM2-Marked Lipid-Sensing Profibrotic Macrophage Cell State (Provisional Patent Specification)#447705Zenodo (CERN)
• Tn5Prime, a Tn5 based 5′ capture method for single cell RNA-seq#492108eScholarship
• Methods and Compositions for Reversing Endothelial-to-Mesenchymal Transition in Systemic Sclerosis-Associated Pulmonary Arterial Hypertension, and a Cell-State Signature for Patient Stratification and Therapeutic Selection#429137Zenodo (CERN)