single-cell-rna-sequencing

Documents about single-cell-rna-sequencing

• Defining endothelial cell functional heterogeneity and plasticity using single-cell RNA-sequencing#643704Harvard DASH
• Validation of Human Retinal Organoid Derived Photoreceptors through Single-cell RNA Sequencing#983577eScholarship
• Single-cell RNA sequencing unravels mosquito biology and host-pathogen interactions#1218649Europe PMC
• Characterizing cancer phenotypes and their tumor microenvironment across malignant progression using single-cell RNA sequencing data#202397Harvard DASH
• Relapse vs Diagnosis in BEAT‑AML (Tyner et al., 2018; PMID: 30333627) : A Reproducible Single‑Block Workflow Demonstrating Proof‑of‑Principle for DRA#632397Zenodo (CERN)
• Bioinformatics analysis and single-cell RNA sequencing: elucidating the ubiquitination pathways and key enzymes in lung adenocarcinoma#935980Repositorio de Universidad Autónoma de Chile.
• Table 3_Uncovering cellular perturbations and key mediator communications in liver cancer using single-cell RNA sequencing.xlsx#325703Figshare
• Table 2_Uncovering cellular perturbations and key mediator communications in liver cancer using single-cell RNA sequencing.xlsx#325704Figshare
• Table 4_Uncovering cellular perturbations and key mediator communications in liver cancer using single-cell RNA sequencing.xlsx#325705Figshare
• Single-nucleus RNA sequencing reveals cell type-specific responses to heat stress in bovine mammary gland#642552Europe PMC
• Development of a comprehensive single cell RNA sequencing pipeline: pre-processing, quality control and identification of outliers#453463SUNScholar
• Data Sheet 1_Uncovering cellular perturbations and key mediator communications in liver cancer using single-cell RNA sequencing.pdf#325702Figshare
• Aβ1-40 induces venular endothelial cell ferroptosis in cerebral amyloid angiopathy via the ATF3/xCT axis: Insights from single-cell RNA sequencing#1052822Europe PMC
• SpCAST enables scalable and interpretable integration of single-cell RNA sequencing and single-cell-resolved spatial transcriptomics#999243arXiv (All)
• Computational Identification of Repurposable Drug Candidates for Psoriatic Arthritis via Single-Cell RNA Sequencing of Synovial Tissue#174079Zenodo (CERN)
• Suco - PBMC#176241Zenodo (CERN)
• Optimal sequencing depth for single-cell RNA-sequencing in Wasserstein space#1013388arXiv (All)
• Computational methodology for analysis of cell type specific RNA isoform expression with long read sequencing#471862HAL (France)
• Hypergraph representations of single-cell RNA sequencing data for improved cell clustering.#4416NCBI PubMed Central
• Empowering fungal infection research with single-cell RNA sequencing.#244402NCBI PubMed Central
• Single-cell RNA Sequencing Dataset of Peripheral Blood Immune Cells from Individuals with Rheumatoid Arthritis#31446DataCite
• scHILL: deciphering individual-level immune cell heterogeneity with single-cell RNA sequencing data.#288710NCBI PubMed Central
• Novel roles for CREG1 in hematopoiesis revealed by single-cell RNA sequencing#364023HAL (France)
• Accurate and scalable demultiplexing of single-cell RNA sequencing using BEACON#1483269bioRxiv / medRxiv
• Deep dynamical models of single-cell multiomic velocities predict loss-of-function and rescue perturbations in B cells#1414923Figshare
• Deep learning models for cell cycle phase prediction from single-cell RNA sequencing data.#364675NCBI PubMed Central
• scLTF: A self-training clustering framework for large-scale single-cell RNA-Seq data#1081366PLOS
• Comprehensive guide for optimizing octopus immune cell preparation to enhance single cell RNA sequencing success.#258289NCBI PubMed Central
• COBRA: cell-type-specific orthogonal batch effect removal algorithm in single cell RNA-sequencing data.#1097955NCBI PubMed Central
• Single-cell RNA sequencing reveals pancreatic cancer microenvironment heterogeneity for precision therapy.#135801NCBI PubMed Central
• Single-cell marker gene clustering: A unified deep learning framework for marker gene-based clustering of single-cell RNA-sequencing data.#1251923NCBI PubMed Central
• Single Nuclei RNA-seq to Map Adipose Cellular Populations and Senescent Cells in Older Subjects#1419424ClinicalTrials.gov
• Modern Mining: The Role of Single-cell RNA Sequencing in Advancing Neuroscience Research.#422968NCBI PubMed Central
• Single-cell RNA sequencing in diabetic foot ulcers: pathogenesis, biomarkers, and translational potential.#1001128NCBI PubMed Central
• The Role of Bone Marrow Microenvironment in Osteogenesis Imperfecta: Evidence from Single-Cell RNA Sequencing#1043972bioRxiv / medRxiv
• Pooling across cells to normalize single-cell RNA sequencing data with many zero counts#400295OpenAlex
• scMVAF: a multi-view adaptive fusion clustering approach for single-cell RNA-sequencing data.#247550NCBI PubMed Central
• Entropy Sorting Feature Selection: information-theoretic gene set identification improves single-cell RNA sequencing data interpretability#267862bioRxiv / medRxiv
• Single-Cell RNA Sequencing Reveals Disrupted Stromal-Epithelial Crosstalk Impairs Gut Barrier in Depression.#409218NCBI PubMed Central
• Single-cell RNAseq reveals adverse metabolic transcriptional program in intrahepatic cholangiocarcinoma malignant cells#288292HAL (France)
• Single-cell RNA-sequencing of dermal fibroblasts demonstrates culture-induced changes and variable persistence of keloid disease features#205474Europe PMC
• Identification and experimental validation of biomarkers associated with exercise in intervertebral disc degeneration through bulk RNA and single-cell RNA sequencing analysis.#610332NCBI PubMed Central
• BEYOND GENE EXPRESSION: COMPUTATIONAL METHODS FOR ISOFORM AND CLONAL DYNAMICS IN SINGLE-CELL RNA SEQUENCING#929426ScholarlyCommons
• Fumarate-associated immunometabolic network in Periodontitis revealed by integrated transcriptomic and single-cell RNA sequencing analysis.#434123NCBI PubMed Central
• Single cell RNA sequencing and emerging transcriptomic technologies in Alzheimer's disease cerebral organoids: a mini review.#1415558NCBI PubMed Central
• Assessing Molecular Mechanisms and Effects of Music Therapy in Youth With Sickle Cell Disease Using Single-cell RNA-sequencing#870908ClinicalTrials.gov
• Single-nucleus RNA-Seq of human and rat cardiomyocytes identifies shared and distinct regulators and features of ageing and disease#418125KU Leuven RDR Dataverse OAI Archive
• Integrating Lung Tissue-based Transcriptome-Wide Association Study with Single-cell RNA-sequencing Uncovers Susceptibility Genes and Cell Types Underlying Lung Cancer Risk#67966bioRxiv / medRxiv
• Benchmarking long-read RNA-sequencing technologies with LongBench: a cross-platform reference dataset profiling cancer cell lines with bulk and single-cell approaches#353149bioRxiv / medRxiv
• scGlycoAI: machine learning analysis of single-cell glycan and RNA sequencing data for cell-type annotation and malignancy-associated glycan discovery.#1493199NCBI PubMed Central