systems-biology

Documents about systems-biology

• Rhythmic gene expression and behavioral plasticity in harvester and carpenter ants#165953bioRxiv / medRxiv
• Cure-screening predicts mechanism of post-antibiotic relapse in Tuberculosis#226034bioRxiv / medRxiv
• Pan-cancer proteogenomic interrogation of the Ubiquitin Proteasome System#267869bioRxiv / medRxiv
• Systems biology informed deep learning for inferring parameters and hidden dynamics#326635MIT Open Scholarship
• Sulfolobales: Acidothermophilic archaea as models for biology and biotechnological applications.#338549NCBI PubMed Central
• RISOP, a Reference-Assisted Approach for Enhanced Identification of Oxidized Phospholipids#339569bioRxiv / medRxiv
• Spatiotemporal decoding of skin biology: development, aging, disease, and regeneration.#425114NCBI PubMed Central
• Introduction to the Special Issue on Proteoglycan and Glycosaminoglycan Biology.#438954NCBI PubMed Central
• Systems Biology from Virus to Humans#492187ScholarWorks@GSU
• A benchmarking framework for single-cell genome-scale metabolic model construction#633086bioRxiv / medRxiv
• Dynamics of clade diversification on the morphological hypercube#639117arXiv (OAI Expanded)
• Simple models of evolution and extinction#639151arXiv (OAI Expanded)
• The genetics of plant-nematode parasitic systems#1043785BioMed Central
• Computational Framework for Acidity-Responsive Regulation in Tumor–Immune Microenvironment Dynamics#187135Zenodo (CERN)
• INTEGRATION OF ETHNO-BIOLOGY AND INDIGENOUS KNOWLEDGE SYSTEMS (IKS) IN SECONDARY SCHOOL BIOLOGY: EFFECTS ON STUDENT ENGAGEMENT, CONCEPTUAL UNDERSTANDING, AND RETENTION IN SOUTH-EAST NIGERIA#691082PhilArchive
• Analysis of Biomolecular and Cellular Systems#66826MIT OpenCourseWare
• Dynamics of Complex Systems: Ecological Theory#66829MIT OpenCourseWare
• Glycan Reachability Analysis: A Bottleneck-Aware Frameworkfor Inferring Tissue-Specific Glycan Biosynthetic Potential fromTranscriptomics#138663bioRxiv / medRxiv
• The Molecular Biology and Replication Cycle of Infectious Pancreatic Necrosis Virus.#140714NCBI PubMed Central
• VUStruct: A compute pipeline for high throughput and personalized structural biology.#174543NCBI PubMed Central
• Data-driven lifespan transitions: cortical morphometry and intrinsic differences across network scales#230250bioRxiv / medRxiv
• Toward trustworthy healthcare AI: designing academic research for translation readiness#233632Springer Nature OA
• Pioneer in Molecular Biology: Conformational Ensembles in Molecular Recognition, Allostery, and Cell Function.#247732NCBI PubMed Central
• Foundational issues of network models in biology#273315Europe PMC
• Sigma-1 receptor promotes glycolysis in neuronal systems by suppressing GRIM19#273338Europe PMC
• Fibrosis: cross-organ biology and pathways to development of innovative drugs.#280903NCBI PubMed Central
• Uncovering the domain language of protein function and proteinnetworks using DANSy#314142bioRxiv / medRxiv
• Bayesian Parameter Balancing Enables Robust and Consistent Estimation of Kinetic Parameter Uncertainty#325026bioRxiv / medRxiv
• Advances in microbial extracellular vesicles: synthetic biology platforms and medical applications.#371392NCBI PubMed Central
• A theoretical biology framework for exploring the behavioral extensibility of reaction systems#377908HAL (France)
• RSK signaling in myeloid malignancies: biology, disease dependency, and therapeutic targeting.#402746NCBI PubMed Central
• Understanding the biology of mucormycosis using contemporary omics tools: a review.#412221NCBI PubMed Central
• Metabolomic signatures support the diagnostics of peritoneal endometriosis using generalised linear models.#429575bioRxiv / medRxiv
• Planetary-scale heterotrophic microbial community modeling assesses metabolic synergy and viral impacts#435619bioRxiv / medRxiv
• Natural killer cells against viral infection: from basic biology to immunotherapy.#436961NCBI PubMed Central
• InferAging: A non-invasive aging clock for quantifying individual differences in aging#441645bioRxiv / medRxiv
• The Allosteric Revolution: From Fundamental Biology to Breakthrough Allosteric Drug Discovery.#472437NCBI PubMed Central
• Deep Mechanistic Models reveal pathway-extrinsic drivers of mammary MAPK signalling heterogeneity#610867bioRxiv / medRxiv
• Chemical biology tools for the O-GlcNAc modification: Determining systems-level functions and druggability.#630919NCBI PubMed Central
• Modelling coevolution in multispecies communities#639101arXiv (OAI Expanded)
• A dynamical theory of speciation on holey adaptive landscapes#639113arXiv (OAI Expanded)
• Rapid parapatric speciation on holey adaptive landscapes#639114arXiv (OAI Expanded)
• Deep learning of dynamic signatures resolves mechanistic ambiguity in complex signaling networks#640120bioRxiv / medRxiv
• How AI Can Advance Mathematical Biology: Opportunities, Challenges, and Future Directions.#659601NCBI PubMed Central
• Towards a Biosemiotic Theoretical Biology: Sign Processes and Meaning-Making in Living Systems#693085PhilArchive
• Systems Biology of PNEUMOVAX®23 and PREVNAR 13®#910656ClinicalTrials.gov
• Organelle-centered ISG15 biology: distinguishing covalent ISGylation from interferon-associated responses.#1001117NCBI PubMed Central
• Experimental Design for Controller Selection in Synthetic Biology#1037456arXiv (All)
• Calibrating tissue level PDE models of ligand dynamics using single cell and spatial transcriptomics data#142573HAL (France)
• Red-bellied Snake (<em>Storeria occipitomaculata</em>) Copulation in South Dakota#181981DigitalCommons@University of Nebraska