systems-biology

Documents about systems-biology

• Estimation of Nonstationary and Noninvertible ARFIMA Model Based on Sequential Detrending#1065656Figshare
• Laboratory Fundamentals in Biological Engineering#67041MIT OpenCourseWare
• Equivalent fitness increase achieved by active learning-navigated habitat reconstruction and evolution-induced genome mutation#146493bioRxiv / medRxiv
• Lights up on the embryonic dance: tools and applications of optogenetics in developmental biology.#154300NCBI PubMed Central
• Open access and digital morphology data in evolutionary biology: expanding frontiers of knowledge.#171986NCBI PubMed Central
• Systems serology of responses against tumor antigens in ovarian cancer reveal disrupted Fc-mediated immunity#234314bioRxiv / medRxiv
• Novel metabolomics-biohumoral biomarkers model for predicting survival of metastatic soft-tissue sarcomas#254355IRIS
• Bottom-Up Synthetic Biology for Artificial Cell Design: From Scaffold Materials to Functional Integration.#255336NCBI PubMed Central
• Multiplex Proteomics of Lewy Body Dementia Reveals Cerebrospinal Fluid Biomarkers of Clinical and Neuropathological Heterogeneity#329308bioRxiv / medRxiv
• Cellular Complexity and Systemic Immune Profiles across Ancestral Diversity in Thailand and Mainland Southeast Asia#346681bioRxiv / medRxiv
• Toxic compound, morphology, biology, and phenology of the calcinogenic plant Nierembergia rivularis Miers (Solanaceae).#362236NCBI PubMed Central
• Bridging physics and biology in acupuncture: flexible multimodal bioelectronics for decoding the deqi microenvironment.#439008NCBI PubMed Central
• A Review of Breeding Systems in the Pineapple Family (Bromeliaceae, Poales)#484449BioMed Central
• Emergence of Rules in Cell Society: Differentiation, Hierarchy, and Stability#639103arXiv (OAI Expanded)
• Power spectra of extinction in the fossil record#639124arXiv (OAI Expanded)
• Nickase and Cas9-induced Homologous Chromosome Templated Repair (HTR) in Drosophila and Mammalian systems#983504eScholarship
• From Tumor Biology to Clinical Perspectives: Novel Biomarkers and Therapeutic Insights in Gastric Cancer.#1054114NCBI PubMed Central
• CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice#6708OpenAlex
• Notes: Range Extension of the Virginia Opossum (<em>Didelphis virginiana</em>) in North Dakota#181983DigitalCommons@University of Nebraska
• From Visit to Reflection: A Narrative Interaction Design Approach for Continuity in Virtual Museum Experiences with LLMs#922291Figshare
• Microbial diversity as a foundation for biological AI : Learning biology from evolution's largest dataset.#13591NCBI PubMed Central
• Radiation Oncology-Biology Integration Network (ROBIN): Bridging the gap between biological research and clinical practice.#154296NCBI PubMed Central
• Scaling and quantization of large-scale foundation model enables resource-efficient predictions in network biology.#239824NCBI PubMed Central
• Computational Model of Flower Pattern Evolution Predicts Spontaneous Emergence of Boundary Cell Types Across Petal Epidermis#267868bioRxiv / medRxiv
• Bridging MBD3 functions in developmental biology and glioma heterogeneity to immune remodeling with future perspectives.#338540NCBI PubMed Central
• Curcumin and Sulforaphane Preserve Mobility in Aging Caenorhabditis elegans via Distinct yet Complementary Transcriptional Signatures#417340bioRxiv / medRxiv
• Cumulant Dynamics of a Population under Multiplicative Selection, Mutation and Drift#639144arXiv (OAI Expanded)
• Analysis of the optimality principles responsible for vascular network architectonics#639147arXiv (OAI Expanded)
• ModelSEED v2: High-throughput genome-scale metabolic model reconstruction with enhanced energy biosynthesis pathway prediction#660915bioRxiv / medRxiv
• Artificial intelligence and algorithmic bias: implications for health systems#666658OpenAlex
• Harnessing biological variability for mechanistic inference: a stochastic framework applied to neural stem cell dynamics#668735bioRxiv / medRxiv
• Twenty-Five Years of the Environmental Stress Response and the Enduring Power of Yeast in Stress Biology.#671148NCBI PubMed Central
• Redox biology underlying the efficacy and toxicity of colistin as a last-resort antibiotic.#1001044NCBI PubMed Central
• Data Sheet 1_A systems microbiology framework for reproducible multi-dataset omics integration with application to long COVID.pdf#635005Figshare
• Topological Entanglement in Intrinsically Disordered Proteins: Sequence, Structural, and Functional Determinants#304131Figshare
• Disentangling direct from indirect relationships in association networks#683837eScholarship
• Metabolic profiling and systems biology analysis of Flammulina filiformis Fv19 extract: an integrated computational and experimental approach for dual anti-cancer and immunomodulatory therapy.#221043NCBI PubMed Central
• Iteration Method for Predicting Essential Proteins Based on Orthology and Protein-protein Interaction Networks#492221ScholarWorks@GSU
• Wood Frogs (<em>Rana sylvatica</em>) in Southwestern Roberts County and Western Grant County, South Dakota#181978DigitalCommons@University of Nebraska
• Mixed-precision for scaling the solving of large systems of ordinary differential equations in computational biology#205784HAL (France)
• Reinforcement-Learning-Enabled Supervisory Control of a Full-Scale Anaerobic Digestion Facility Using a Calibrated Digital Twin#1065645Figshare
• A century of vitamin E research: The innovative journey from basic biology to synthetic bio-manufacturing.#25633NCBI PubMed Central
• Cholangiocyte biology in primary sclerosing cholangitis and other cholangiopathies: pathogenesis, clinical insights, and experimental tools.#159768NCBI PubMed Central
• Leveraging machine learning and network biology approaches to predict brain gene expression from blood transcriptomes.#227789NCBI PubMed Central
• DREAMER-S: Deep leaRning-Enabled Attention-based Multiple-instance approaches with Explainable Representations for Spatial biology.#262981NCBI PubMed Central
• Multi-lineage transcriptional and cell communication signatures define evolving personalized mechanisms that initiate and perpetuate rheumatoid arthritis#300123bioRxiv / medRxiv
• Tumor-Mimic Artificial Cell Integrated With In Situ Synthetic Biology for Testing of Antitumor Drug Sensitivity.#330786NCBI PubMed Central
• Human Genome-Scale Models of Metabolism and Gene Expression Reveal Resource Constraints of Cancer Cell Lines#332416bioRxiv / medRxiv
• The impact of the six pillars of lifestyle medicine on the biology of skin aging.#334815NCBI PubMed Central
• Cell state plasticity emerging from co-regulated, competitive, and configurable interactions within the AP-1 network#353154bioRxiv / medRxiv